APBC2005 Accepted Full Papers
Paper ID	Paper Title
107	A Graph Database with Visual Queries for Genomics
111	Protein Folding Trajectory Analysis using Patterned Clusters
116	A Novel Method for Protein Subcellular Localization: Combining Residue-couple Model and SVM
118	A Better Gap Penalty for Pairwise-SVM
120	PRIMA: PEPTIDE ROBUST IDENTIFICATION FROM MS/MS SPECTRA
123	BLOMAP: AN ENCODING OF AMINO ACIDS WHICH IMPROVES SIGNAL PEPTIDE CLEAVAGE SITE PREDICTION
125	Exact Algorithms for Motif Search
126	Exact Algorithms for Planted Motif Challenge Problems
128	Quartet Based Phylogeny Reconstruction with Constraint Programming
130	Bacterial Population Assay via k-mer Analysis
138	MODELING 5' REGIONS OF HISTONE GENES USING BAYESIAN NETWORKS
142	Unique Peptide Prediction of RNase Family Sequences based on Reinforced Merging Algorithms
146	Clique Based Algorithms for Protein Threading with Profiles and Constraints
147	THE USE OF FUNCTIONAL DOMAINS TO IMPROVE TRANSMEMBRANE PROTEIN TOPOLOGY PREDICTION
151	Improved Algorithms for Multiplex PCR Primer Set Selection with Amplification Length Constraints
161	CLASSIFICATION OF PROTEIN 3D FOLDS BY HIDDEN MARKOV LEARNING ON SEQUENCES OF STRUCTURAL ALPHABETS
162	Feature dimension reduction for microarray data analysis using Local Linear Embedding
173	Inferring phylogenetic relationships avoiding forbidden rooted triplets
180	VIRUS IDENTIFICATION BY USING A DATABASE TO DYNAMICALLY AID PROBE DESIGN
184	SVM-RFE peak selection for cancer classification with mass spectrometry data
186	An $O(n^2)$ Algorithm for Signed Translocation
188	A highly scalable algorithm for the extraction of cis-regulatory regions
192	Allowing Mismatches in Anchors for Whole Genome Alignment: Generation and Effectiveness
195	Detecting residues in targeting peptides
196	CELLS IN SILICO (CIS) : A BIOMEDICAL SIMULATION FRAMEWORK BASED ON MARKOV RANDOM FIELD
201	TOWARD DISCOVERING DISEASE-SPECIFIC GENE NETWORKS
203	A new regulatory interactions suggested by simulations for circadian genetic control mechanism in mammals
204	High Dimensional Indexing for Protein Structure Matching
209	A Support Vector Machine Approach for  Prediction of T Cell Epitopes
212	VOTING ALGORITHMS FOR DISCOVERING LONG MOTIFS
216	PROFILES AND FUZZY K-NEAREST NEIGHBOR ALGORITHM FOR PROTEIN SECONDARY STRUCTURE PREDICTION
236	Consensus Fold Recognition by Predicted Model Quality
241	HYBRID REGISTRATION FOR TWO-DIMENSIONAL GEL PROTEIN IMAGES
246	PLS and SVD based penalized logistic regression for cancer classification using microarray data
248	GENETIC ALGORITHMS AND SILHOUETTE MEASURES APPLIED TO MICROARRAY DATA CLASSIFICATION