SLE340 - Genomes and Bioinformatics
Unit details
| Year: | 2024 unit information |
|---|---|
| Enrolment modes: | Trimester 1: Burwood (Melbourne), Waurn Ponds (Geelong) |
| Credit point(s): | 1 |
| EFTSL value: | 0.125 |
| Unit Chair: | Trimester 1: Beata Ujvari |
| Prerequisite: | SLE254 |
| Corequisite: | Nil |
| Incompatible with: | Nil |
| Typical study commitment: | Students will on average spend 150 hours over the teaching period undertaking the teaching, learning and assessment activities for this unit. This will include educator guided online learning activities within the unit site. |
| Educator-facilitated (scheduled) learning activities - on-campus unit enrolment: | 2 x 1 hour online lectures per week; 1 x 1 hour seminar per week, 5 x 3 hour practical experience (laboratory) per trimester. |
Content
Topics will include the theory and practise of Bioinformatics. This will include the analysis of sequence data using databases and the analysis of phylogenetic and population genetic datasets. In addition, the unit will cover the process of molecular evolution and the application of this knowledge in understanding how genomes evolve. This genomic evolution will be discussed in relation to the resulting evolution in developmental processes. Molecular markers and their use in genetic mapping of both single and multiple genes that contribute to the production of traits and their use examined in phylogenetic reconstruction and population genetics will be discussed. Students will learn about high throughput next generation sequencing methods and genome assembly and annotation. Additionally, students will develop laboratory techniques/skills relevant to bioinformatics, in a group environment, and ascertain how research projects are undertaken in their discipline.
| ULO | These are the Learning Outcomes (ULO) for this unit. At the completion of this unit, successful students can: | Deakin Graduate Learning Outcomes |
|---|---|---|
| ULO1 | Develop an understanding of Bioinformatics analysis methods and processes and to be able to practically apply that knowledge. | GLO1: Discipline-specific knowledge and capabilities GLO3: Digital literacy GLO4: Critical thinking GLO5: Problem solving |
| ULO2 | Understand the molecular evolutionary process and to recognise the signatures of that process. | GLO1: Discipline-specific knowledge and capabilities GLO4: Critical thinking GLO6: Self-management |
| ULO3 | Appreciate all of the varied applications of molecular biology and bioinformatics. | GLO1: Discipline-specific knowledge and capabilities GLO6: Self-management |
| ULO4 | Develop the theoretical understanding of phylogenetic reconstruction and evolutionary developmental process. | GLO1: Discipline-specific knowledge and capabilities GLO3: Digital literacy GLO4: Critical thinking |
| ULO5 | Develop collaborative and practical skills through teamwork in laboratory and computer based sessions. | GLO1: Discipline-specific knowledge and capabilities GLO2: Communication GLO3: Digital literacy GLO4: Critical thinking GLO5: Problem solving GLO6: Self-management GLO7: Teamwork |
Assessment
| Assessment Description | Student output | Grading and weighting (% total mark for unit) | Indicative due week |
|---|---|---|---|
| Assessment 1 | Online test | 20% | Week 6 |
| Assessment 2 | Written assignment, 1500 word maximum | 15% | Week 8 |
| Assessment 3 | In-class 15-minute collaborative presentation | 15% | Weeks 10 and 11 |
| End-of-Unit Assessment | Timed online test | 50% | End-of-Unit Assessment Period |
The assessment due weeks provided may change. The Unit Chair will clarify the exact assessment requirements, including the due date, at the start of the teaching period.
Learning Resource
The texts and reading list for the unit can be found on the University Library via the link below: SLE340 Note: Select the relevant trimester reading list. Please note that a future teaching period's reading list may not be available until a month prior to the start of that teaching period so you may wish to use the relevant trimester's prior year reading list as a guide only.
Unit Fee Information
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