A/Prof. Alyssa Barry

Pf7: an open dataset of Plasmodium falciparum genome variation in 20,000 worldwide samples

M Abdel Hamid, M Abdelraheem, D Acheampong, A Ahouidi, M Ali, J Almagro-Garcia, A Amambua-Ngwa, C Amaratunga, L Amenga-Etego, B Andagalu, T Anderson, V Andrianaranjaka, I Aniebo, E Aninagyei, F Ansah, P Ansah, T Apinjoh, P Arnaldo, E Ashley, S Auburn, G Awandare, H Ba, V Baraka, A Barry, P Bejon, G Bertin, M Boni, S Borrmann, T Bousema, M Bouyou-Akotet, O Branch, P Bull, H Cheah, K Chindavongsa, T Chookajorn, K Chotivanich, A Claessens, D Conway, V Corredor, E Courtier, A Craig, U D'Alessandro, S Dama, N Day, B Denis, M Dhorda, M Diakite, A Djimde, C Dolecek, A Dondorp, S Doumbia, C Drakeley, E Drury, P Duffy, D Echeverry, T Egwang, S Enosse, B Erko, R Fairhurst, A Faiz, C Fanello, M Fleharty, M Forbes, M Fukuda, D Gamboa, A Ghansah, L Golassa, S Goncalves, G Harrison, S Healy, J Hendry, A Hernandez-Koutoucheva, T Hien, C Hill, F Hombhanje, A Hott, Y Htut, M Hussein, M Imwong, D Ishengoma, S Jackson, C Jacob, J Jeans, K Johnson, C Kamaliddin, E Kamau, J Keatley, T Kochakarn, D Konate, A Konaté, A Kone, D Kwiatkowski, M Kyaw, D Kyle, M Lawniczak, S Lee, M Lemnge, P Lim, C Lon, K Loua

(2023), Vol. 8, pp. 1-27, Wellcome Open Research, London, Eng., C1-1

Sulfonylpiperazine compounds prevent Plasmodium falciparum invasion of red blood cells through interference with actin-1/profilin dynamics

M Dans, H Piirainen, W Nguyen, S Khurana, S Mehra, Z Razook, N Geoghegan, A Dawson, S Das, M Schneider, T Jonsdottir, M Gabriela, M Gancheva, C Tonkin, V Mollard, C Goodman, G McFadden, D Wilson, K Rogers, A Barry, B Crabb, T de Koning-Ward, B Sleebs, I Kursula, P Gilson

(2023), Vol. 21, pp. 1-34, PLoS Biology, San Francisco, Calif., C1

Plasmodium GPI-anchored micronemal antigen is essential for parasite transmission through the mosquito host

C Jennison, J Armstrong, D Dankwa, N Hertoghs, S Kumar, B Abatiyow, M Naung, N Minkah, K Swearingen, R Moritz, A Barry, S Kappe, A Vaughan

(2023), pp. 1-19, Molecular Microbiology, London, Eng., C1

A Pyridyl-Furan Series Developed from the Open Global Health Library Block Red Blood Cell Invasion and Protein Trafficking in Plasmodium falciparum through Potential Inhibition of the Parasite's PI4KIIIB Enzyme

D Ling, W Nguyen, O Looker, Z Razook, K McCann, A Barry, C Scheurer, S Wittlin, M Famodimu, M Delves, H Bullen, B Crabb, B Sleebs, P Gilson

(2023), Vol. 9, pp. 1695-1710, ACS infectious diseases, C1-1

Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species

J Han, J Munro, A Kocoski, A Barry, M Bahlo

(2022), Vol. 18, pp. 1-18, PLoS Genetics, San Francisco, Calif., C1

Global diversity and balancing selection of 23 leading Plasmodium falciparum candidate vaccine antigens

M Naung, E Martin, J Munro, S Mehra, A Guy, M Laman, G Harrison, L Tavul, M Hetzel, D Kwiatkowski, I Mueller, M Bahlo, A Barry

(2022), Vol. 18, PLoS Computational Biology, San Francisco, Calif., C1

STRIVE PNG: using a partnership-based approach in implementation research to strengthen surveillance and health systems in Papua New Guinea

R Farquhar, A Dori, S MacCana, N Tefuarani, E Lavu, A Barry, S Karl, L Makita, L Robinson, M Laman

(2022), Vol. 20, pp. 2-10, Health research policy and systems, London, England, C1

An open dataset of Plasmodium vivax genome variation in 1,895 worldwide samples

I Adam, M Alam, S Alemu, C Amaratunga, R Amato, V Andrianaranjaka, N Anstey, A Aseffa, E Ashley, A Assefa, S Auburn, B Barber, A Barry, D Batista Pereira, J Cao, N Chau, K Chotivanich, C Chu, A Dondorp, E Drury, D Echeverry, B Erko, F Espino, R Fairhurst, A Faiz, M Fernanda Villegas, Q Gao, L Golassa, S Goncalves, M Grigg, Y Hamedi, T Hien, Y Htut, K Johnson, N Karunaweera, W Khan, S Krudsood, D Kwiatkowski, M Lacerda, B Ley, P Lim, Y Liu, A Llanos-Cuentas, C Lon, T Lopera-Mesa, J Marfurt, P Michon, O Miotto, R Mohammed, I Mueller, C Namaik-larp, P Newton, T Nguyen, F Nosten, R Noviyanti, Z Pava, R Pearson, B Petros, A Phyo, R Price, S Pukrittayakamee, A Rahim, M Randrianarivelojosia, J Rayner, A Rumaseb, S Siegel, V Simpson, K Thriemer, A Tobon-Castano, H Trimarsanto, M Urbano Ferreira, I Vélez, S Wangchuk, T Wellems, N White, T William, M Yasnot, D Yilma

(2022), Vol. 7, pp. 136-136, Wellcome Open Research, England, C1

VIVID: A Web Application for Variant Interpretation and Visualization in Multi-dimensional Analyses

S Tichkule, Y Myung, M Naung, B Ansell, A Guy, N Srivastava, S Mehra, S Cacciò, I Mueller, A Barry, C van Oosterhout, B Pope, D Ascher, A Jex

(2022), Vol. 39, Molecular biology and evolution, United States, C1

A Decade of Progress Accelerating Malaria Control in Mali: Evidence from the West Africa International Center of Excellence for Malaria Research

S Doumbia, N Sogoba, M Diakite, M Toure, M Keita, D Konaté, S Diawara, A Diarra, D Sanogo, F Kane, S Diakite, K Traore, S Thiam, S Traoré, I Cisse, J Mihigo, M Coulibaly, D Dabitao, M Alifrangis, A Barry, G Müller, J Beier, J Shaffer

(2022), Vol. 107, pp. 75-83, American Journal of Tropical Medicine and Hygiene, United States, C1

The West Africa ICEMR Partnerships for Guiding Policy to Improve the Malaria Prevention and Control

S Doumbia, M Toure, N Sogoba, M Alifrangis, M Diakite, A Diarra, M Keita, D Konaté, S Diawara, S Thiam, S Keita, M Tounkara, I Cissé, V Sanogo, M Magassa, A Barry, P Winch, H Marker, J Shaffer, S Traoré, G Müller, L Cui, J Beier, J Mihigo

(2022), Vol. 107, pp. 84-89, American Journal of Tropical Medicine and Hygiene, United States, C1

Asia-Pacific ICEMR: Understanding Malaria Transmission to Accelerate Malaria Elimination in the Asia Pacific Region

I Mueller, A Vantaux, S Karl, M Laman, B Witkowski, A Pepey, R Vinit, M White, A Barry, J Beeson, L Robinson

(2022), Vol. 107, pp. 131-137, American Journal of Tropical Medicine and Hygiene, United States, C1

A molecular barcode and web-based data analysis tool to identify imported Plasmodium vivax malaria

H Trimarsanto, R Amato, R Pearson, E Sutanto, R Noviyanti, L Trianty, J Marfurt, Z Pava, D Echeverry, T Lopera-Mesa, L Montenegro, A Tobón-Castaño, M Grigg, B Barber, T William, N Anstey, S Getachew, B Petros, A Aseffa, A Assefa, A Rahim, N Chau, T Hien, M Alam, W Khan, B Ley, K Thriemer, S Wangchuck, Y Hamedi, I Adam, Y Liu, Q Gao, K Sriprawat, M Ferreira, M Laman, A Barry, I Mueller, M Lacerda, A Llanos-Cuentas, S Krudsood, C Lon, R Mohammed, D Yilma, D Pereira, F Espino, C Chu, I Vélez, C Namaik-larp, M Villegas, J Green, G Koh, J Rayner, E Drury, S Gonçalves, V Simpson, O Miotto, A Miles, N White, F Nosten, D Kwiatkowski, R Price, S Auburn

(2022), Vol. 5, pp. 1411-, Communications Biology, England, C1

An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples

A Ahouidi, M Ali, J Almagro-Garcia, A Amambua-Ngwa, C Amaratunga, R Amato, L Amenga-Etego, B Andagalu, T Anderson, V Andrianaranjaka, T Apinjoh, C Ariani, E Ashley, S Auburn, G Awandare, H Ba, V Baraka, A Barry, P Bejon, G Bertin, M Boni, S Borrmann, T Bousema, O Branch, P Bull, G Busby, T Chookajorn, K Chotivanich, A Claessens, D Conway, A Craig, U D'Alessandro, S Dama, N Day, B Denis, M Diakite, A Djimdé, C Dolecek, A Dondorp, C Drakeley, E Drury, P Duffy, D Echeverry, T Egwang, B Erko, R Fairhurst, A Faiz, C Fanello, M Fukuda, D Gamboa, A Ghansah, L Golassa, S Goncalves, W Hamilton, G Harrison, L Hart, C Henrichs, T Hien, C Hill, A Hodgson, C Hubbart, M Imwong, D Ishengoma, S Jackson, C Jacob, B Jeffery, A Jeffreys, K Johnson, D Jyothi, C Kamaliddin, E Kamau, M Kekre, K Kluczynski, T Kochakarn, A Konaté, D Kwiatkowski, M Kyaw, P Lim, C Lon, K Loua, O Maïga-Ascofaré, C Malangone, M Manske, J Marfurt, K Marsh, M Mayxay, A Miles, O Miotto, V Mobegi, O Mokuolu, J Montgomery, I Mueller, P Newton, T Nguyen, T Nguyen, H Noedl, F Nosten, R Noviyanti, A Nzila, L Ochola-Oyier

(2021), Vol. 6, pp. 1-31, Wellcome Open Research, London, England, C1

Whole-genome analysis of Malawian Plasmodium falciparum isolates identifies possible targets of allele-specific immunity to clinical malaria

Z Shah, M Naung, K Moser, M Adams, A Buchwald, A Dwivedi, A Ouattara, K Seydel, D Mathanga, A Barry, D Serre, M Laufer, J Silva, S Takala-Harrison

(2021), Vol. 17, PLoS Genetics, United States, C1

Community-based molecular and serological surveillance of subclinical malaria in Myanmar

K O’Flaherty, W Oo, S Zaloumis, J Cutts, K Aung, M Thein, D Drew, Z Razook, A Barry, N Parischa, N Zaw, H Thu, A Thi, W Htay, A Soe, J Simpson, J Beeson, P Agius, F Fowkes

(2021), Vol. 19, BMC Medicine, England, C1

Surveillance of molecular markers of Plasmodium falciparum artemisinin resistance (kelch13 mutations) in Papua New Guinea between 2016 and 2018

D Lautu-Gumal, Z Razook, T Koleala, E Nate, S McEwen, D Timbi, M Hetzel, E Lavu, N Tefuarani, L Makita, J Kazura, I Mueller, W Pomat, M Laman, L Robinson, A Barry

(2021), Vol. 16, pp. 188-193, International Journal for Parasitology: Drugs and Drug Resistance, Amsterdam, The Netherlands, C1

A Natural Peptide Antigen within the Plasmodium Ribosomal Protein RPL6 Confers Liver TRM Cell-Mediated Immunity against Malaria in Mice

A Valencia-Hernandez, W Ng, N Ghazanfari, S Ghilas, M de Menezes, L Holz, C Huang, K English, M Naung, P Tan, K Tullett, T Steiner, M Enders, L Beattie, Y Chua, C Jones, A Cozijnsen, V Mollard, Y Cai, D Bowen, A Purcell, N La Gruta, J Villadangos, T de Koning-Ward, A Barry, W Barchet, I Cockburn, G McFadden, S Gras, M Lahoud, P Bertolino, R Schittenhelm, I Caminschi, W Heath, D Fernandez-Ruiz

(2020), Vol. 27, pp. 950-962.e7, Cell Host and Microbe, United States, C1

The epidemiology of Plasmodium falciparum and Plasmodium vivax in East Sepik Province, Papua New Guinea, pre- And post-implementation of national malaria control efforts

J Kattenberg, D Gumal, M Ome-Kaius, B Kiniboro, M Philip, S Jally, B Kasian, N Sambale, P Siba, S Karl, A Barry, I Felger, J Kazura, I Mueller, L Robinson

(2020), Vol. 19, Malaria Journal, England, C1

Population genomics identifies a distinct plasmodium vivax population on the china-myanmar border of southeast asia

A Brashear, Q Fan, Y Hu, Y Li, Y Zhao, Z Wang, Y Cao, J Miao, A Barry, L Cui

(2020), Vol. 14, pp. 1-23, PLoS Neglected Tropical Diseases, United States, C1

Evaluation of the effectiveness of topical repellent distributed by village health volunteer networks against Plasmodium spp. infection in Myanmar: A stepped-wedge cluster randomised trial

P Agius, J Cutts, W Oo, A Thi, K O’Flaherty, K Aung, H Thu, P Aung, M Thein, N Zaw, W Min Htay, A Soe, Z Razook, A Barry, W Htike, A Devine, J Simpson, B Crabb, J Beeson, N Pasricha, F Fowkes

(2020), Vol. 17, PLoS Medicine, United States, C1

SNP barcodes provide higher resolution than microsatellite markers to measure Plasmodium vivax population genetics

A Fola, E Kattenberg, Z Razook, D Lautu-Gumal, S Lee, S Mehra, M Bahlo, J Kazura, L Robinson, M Laman, I Mueller, A Barry

(2020), Vol. 19, Malaria Journal, England, C1

Monitoring Plasmodium falciparum and Plasmodium vivax using microsatellite markers indicates limited changes in population structure after substantial transmission decline in Papua New Guinea

J Kattenberg, Z Razook, R Keo, C Koepfli, C Jennison, D Lautu-Gumal, A Fola, M Ome-Kaius, C Barnadas, P Siba, I Felger, J Kazura, I Mueller, L Robinson, A Barry

(2020), Vol. 29, pp. 4525-4541, Molecular Ecology, England, C1

Emergence of artemisinin-resistant Plasmodium falciparum with kelch13 C580Y mutations on the island of New Guinea

O Miotto, M Sekihara, S Tachibana, M Yamauchi, R Pearson, R Amato, S Gonçalves, S Mehra, R Noviyanti, J Marfurt, S Auburn, R Price, I Mueller, M Ikeda, T Mori, M Hirai, L Tavul, M Hetzel, M Laman, A Barry, P Ringwald, J Ohashi, F Hombhanje, D Kwiatkowski, T Mita

(2020), Vol. 16, PLoS Pathogens, United States, C1

Differential impact of malaria control interventions on P. falciparum and P. vivax infections in young Papua New Guinean children

M Ome-Kaius, J Kattenberg, S Zaloumis, M Siba, B Kiniboro, S Jally, Z Razook, D Mantila, D Sui, J Ginny, A Rosanas-Urgell, S Karl, T Obadia, A Barry, S Rogerson, M Laman, D Tisch, I Felger, J Kazura, I Mueller, L Robinson

(2019), Vol. 17, BMC Medicine, England, C1

Protective Immunity against Severe Malaria in Children Is Associated with a Limited Repertoire of Antibodies to Conserved PfEMP1 Variants

S Tessema, R Nakajima, A Jasinskas, S Monk, L Lekieffre, E Lin, B Kiniboro, C Proietti, P Siba, P Felgner, D Doolan, I Mueller, A Barry

(2019), Vol. 26, pp. 579-590.e5, Cell Host and Microbe, United States, C1

Molecular epidemiology of residual Plasmodium vivax transmission in a paediatric cohort in Solomon Islands

Y Quah, A Waltmann, S Karl, M White, V Vahi, A Darcy, F Pitakaka, M Whittaker, D Tisch, A Barry, C Barnadas, J Kazura, I Mueller

(2019), Vol. 18, Malaria Journal, England, C1

Identity-by-descent analyses for measuring population dynamics and selection in recombining pathogens

L Henden, S Lee, I Mueller, A Barry, M Bahlo

(2018), Vol. 14, PLoS Genetics, United States, C1

Increasingly inbred and fragmented populations of Plasmodium vivax associated with the eastward decline in malaria transmission across the Southwest Pacific

A Waltmann, C Koepfli, N Tessier, S Karl, A Fola, A Darcy, L Wini, G Harrison, C Barnadas, C Jennison, H Karunajeewa, S Boyd, M Whittaker, J Kazura, M Bahlo, I Mueller, A Barry

(2018), Vol. 12, PLoS Neglected Tropical Diseases, United States, C1

Antibodies to intercellular adhesion molecule 1-binding Plasmodium falciparum erythrocyte membrane protein 1-DBLβ are biomarkers of protective immunity to malaria in a cohort of young children from Papua New Guinea

S Tessema, D Utama, O Chesnokov, A Hodder, C Lin, G Harrison, J Jespersen, B Petersen, L Tavul, P Siba, D Kwiatkowski, T Lavstsen, D Hansen, A Oleinikov, I Mueller, A Barry

(2018), Vol. 86, Infection and Immunity, United States, C1

Re-emergence of yaws after single mass azithromycin treatment followed by targeted treatment: a longitudinal study

O Mitjà, C Godornes, W Houinei, A Kapa, R Paru, H Abel, C González-Beiras, S Bieb, J Wangi, A Barry, S Sanz, Q Bassat, S Lukehart

(2018), Vol. 391, pp. 1599-1607, The Lancet, England, C1

Nationwide genetic surveillance of Plasmodium vivax in Papua New Guinea reveals heterogeneous transmission dynamics and routes of migration amongst subdivided populations

A Fola, E Nate, G Abby Harrison, C Barnadas, M Hetzel, J Iga, P Siba, I Mueller, A Barry

(2018), Vol. 58, pp. 83-95, Infection, Genetics and Evolution, Netherlands, C1

Development of a Multilocus Sequence Typing (MLST) scheme for Treponema pallidum subsp. pertenue: Application to yaws in Lihir Island, Papua New Guinea

C Godornes, L Giacani, A Barry, O Mitja, S Lukehart

(2017), Vol. 11, PLoS Neglected Tropical Diseases, United States, C1

Sustained malaria control over an 8-year period in Papua New Guinea: The challenge of low-density asymptomatic plasmodium infections

C Koepfli, M Ome-Kaius, S Jally, E Malau, S Maripal, J Ginny, L Timinao, J Kattenberg, T Obadia, M White, P Rarau, N Senn, A Barry, J Kazura, I Mueller, L Robinson

(2017), Vol. 216, pp. 1434-1443, Journal of Infectious Diseases, Oxford, Eng., C1

Challenges for achieving safe and effective radical cure of Plasmodium vivax: a round table discussion of the APMEN Vivax Working Group

K Thriemer, B Ley, A Bobogare, L Dysoley, M Alam, A Pasaribu, J Sattabongkot, E Jambert, G Domingo, R Commons, S Auburn, J Marfurt, A Devine, M Aktaruzzaman, N Sohel, R Namgay, T Drukpa, S Sharma, E Sarawati, I Samad, M Theodora, S Nambanya, S Ounekham, R Mudin, G Da Thakur, L Makita, R Deray, S Lee, L Boaz, M Danansuriya, S Mudiyanselage, N Chinanonwait, S Kitchakarn, J Nausien, E Naket, T Duc, H Do Manh, Y Hong, Q Cheng, J Richards, R Kusriastuti, A Satyagraha, R Noviyanti, X Ding, W Khan, C Swe Phru, Z Guoding, G Qi, A Kaneko, O Miotto, W Nguitragool, W Roobsoong, K Battle, R Howes, A Roca-Feltrer, S Duparc, I Bhowmick, E Kenangalem, J Bibit, A Barry, D Sintasath, R Abeyasinghe, C Sibley, J McCarthy, L Von Seidlein, J Baird, R Price

(2017), Vol. 16, Malaria Journal, England, C1

Higher complexity of infection and genetic diversity of plasmodium vivax than plasmodium falciparum across all malaria transmission zones of Papua New Guinea

A Fola, G Harrison, M Hazairin, C Barnadas, M Hetzel, J Iga, P Siba, I Mueller, A Barry

(2017), Vol. 96, pp. 630-641, American Journal of Tropical Medicine and Hygiene, Northbrook, Ill., C1

Dissecting malaria biology and epidemiology using population genetics and genomics

S Auburn, A Barry

(2017), Vol. 47, pp. 77-85, International Journal for Parasitology, Amsterdam, The Netherlands, C1

Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax

D Hupalo, Z Luo, A Melnikov, P Sutton, P Rogov, A Escalante, A Vallejo, S Herrera, M Arévalo-Herrera, Q Fan, Y Wang, L Cui, C Lucas, S Durand, J Sanchez, G Christian Baldeviano, A Lescano, M Laman, C Barnadas, A Barry, I Mueller, J Kazura, A Eapen, D Kanagaraj, N Valecha, M Ferreira, W Roobsoong, W Nguitragool, J Sattabonkot, D Gamboa, M Kosek, J Vinetz, L González-Cerón, B Birren, D Neafsey, J Carlton

(2016), Vol. 48, pp. 953-958, Nature Genetics, United States, C1

Genomic analysis of local variation and recent evolution in Plasmodium vivax

R Pearson, R Amato, S Auburn, O Miotto, J Almagro-Garcia, C Amaratunga, S Suon, S Mao, R Noviyanti, H Trimarsanto, J Marfurt, N Anstey, T William, M Boni, C Dolecek, H Tran, N White, P Michon, P Siba, L Tavul, G Harrison, A Barry, I Mueller, M Ferreira, N Karunaweera, M Randrianarivelojosia, Q Gao, C Hubbart, L Hart, B Jeffery, E Drury, D Mead, M Kekre, S Campino, M Manske, V Cornelius, B MacInnis, K Rockett, A Miles, J Rayner, R Fairhurst, F Nosten, R Price, D Kwiatkowski

(2016), Vol. 48, pp. 959-964, Nature Genetics, London, Eng., C1

Implications of Plasmodium vivax biology for control, elimination, and research

P Olliaro, J Barnwell, A Barry, K Mendis, I Mueller, J Reeder, G Shanks, G Snounou, C Wongsrichanalai

(2016), Vol. 95, pp. 4-14, American Journal of Tropical Medicine and Hygiene, United States, C1

Spatial effects on the multiplicity of Plasmodium falciparum infections

S Karl, M White, G Milne, D Gurarie, S Hay, A Barry, I Felger, I Mueller

(2016), Vol. 11, PLoS ONE, United States, C1

Genomic epidemiology of artemisinin resistant malaria

R Amato, O Miotto, C Woodrow, J Almagro-Garcia, I Sinha, S Campino, D Mead, E Drury, M Kekre, M Sanders, A Amambua-Ngwa, C Amaratunga, L Amenga-Etego, V Andrianaranjaka, T Apinjoh, E Ashley, S Auburn, G Awandare, V Baraka, A Barry, M Boni, S Borrmann, T Bousema, O Branch, P Bull, K Chotivanich, D Conway, A Craig, N Day, A Djimdé, C Dolecek, A Dondorp, C Drakeley, P Duffy, D Echeverry, T Egwang, R Fairhurst, A Faiz, C Fanello, T Hien, A Hodgson, M Imwong, D Ishengoma, P Lim, C Lon, J Marfurt, K Marsh, M Mayxay, P Michon, V Mobegi, O Mokuolu, J Montgomery, I Mueller, M Kyaw, P Newton, F Nosten, R Noviyanti, A Nzila, H Ocholla, A Oduro, M Onyamboko, J Ouedraogo, A Phyo, C Plowe, R Price, S Pukrittayakamee, M Randrianarivelojosia, P Ringwald, L Ruiz, D Saunders, A Shayo, P Siba, S Takala-Harrison, T Thanh, V Thathy, F Verra, J Wendler, N White, H Ye, V Cornelius, R Giacomantonio, D Muddyman, C Henrichs, C Malangone, D Jyothi, R Pearson, J Rayner, G McVean, K Rockett, A Miles, P Vauterin, B Jeffery, M Manske, J Stalker, B Macinnis, D Kwiatkowski

(2016), Vol. 5, eLife, England, C1

Structurally conserved erythrocyte-binding domain in Plasmodium provides a versatile scaffold for alternate receptor engagement

J Gruszczyk, N Lim, A Arnott, W He, W Nguitragool, W Roobsoong, Y Mok, J Murphy, K Smith, S Lee, M Bahlo, I Mueller, A Barry, W Tham

(2016), Vol. 113, pp. E191-E200, Proceedings of the National Academy of Sciences of the United States of America, Irvine, Calif., C1

Malaria Molecular Epidemiology: Lessons from the International Centers of Excellence for Malaria Research Network

A Escalante, M Ferreira, J Vinetz, S Volkman, L Cui, D Gamboa, D Krogstad, A Barry, J Carlton, A van Eijk, K Pradhan, I Mueller, B Greenhouse, M Pacheco, A Vallejo, S Herrera, I Felger

(2015), Vol. 93, pp. 79-86, The American journal of tropical medicine and hygiene, Northbrook, Ill., C1

Designing malaria vaccines to circumvent antigen variability

A Ouattara, A Barry, S Dutta, E Remarque, J Beeson, C Plowe

(2015), Vol. 33, pp. 7506-7512, Vaccine, Amsterdam, The Netherlands, C1

High Rates of Asymptomatic, Sub-microscopic Plasmodium vivax Infection and Disappearing Plasmodium falciparum Malaria in an Area of Low Transmission in Solomon Islands

A Waltmann, A Darcy, I Harris, C Koepfli, J Lodo, V Vahi, D Piziki, G Shanks, A Barry, M Whittaker, J Kazura, I Mueller

(2015), Vol. 9, pp. 1-18, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1

Blood-stage parasitaemia and age determine Plasmodium falciparum and P. vivax gametocytaemia in Papua New Guinea

C Koepfli, L Robinson, P Rarau, M Salib, N Sambale, R Wampfler, I Betuela, W Nuitragool, A Barry, P Siba, I Felger, I Mueller

(2015), Vol. 10, pp. 1-15, PLoS ONE, San Francisco, Calif., C1

Uncovering the transmission dynamics of Plasmodium vivax using population genetics

A Barry, A Waltmann, C Koepfli, C Barnadas, I Mueller

(2015), Vol. 109, pp. 142-152, Pathogens and Global Health, London, Eng., C1

Plasmodium vivax Populations Are More Genetically Diverse and Less Structured than Sympatric Plasmodium falciparum Populations

C Jennison, A Arnott, N Tessier, L Tavul, C Koepfli, I Felger, P Siba, J Reeder, M Bahlo, I Mueller, A Barry

(2015), Vol. 9, pp. 1-20, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1

Phylogeography of var gene repertoires reveals fine-scale geospatial clustering of Plasmodium falciparum populations in a highly endemic area

S Tessema, S Monk, M Schultz, L Tavul, J Reeder, P Siba, I Mueller, A Barry

(2015), Vol. 24, pp. 484-497, Molecular Ecology, London, Eng., C1

How molecular epidemiology studies can support the National Malaria Control Program in Papua New Guinea

C Koepfli, A Barry, S Javati, L Timinao, E Nate, I Mueller, C Barnadas

(2014), Vol. 57, pp. 75-85, Papua and New Guinea medical journal, Port Moresby, New Guinea, C1-1

Limited antigenic diversity of Plasmodium falciparum apical membrane antigen 1 supports the development of effective multi-allele vaccines

U Terheggen, D Drew, A Hodder, N Cross, C Mugyenyi, A Barry, R Anders, S Dutta, F Osier, S Elliott, N Senn, D Stanisic, K Marsh, P Siba, I Mueller, J Richards, J Beeson

(2014), Vol. 12, pp. 1-20, BMC Medicine, London, Eng., C1-1

Strategies for designing and monitoring malaria vaccines targeting diverse antigens

A Barry, A Arnott

(2014), Vol. 5, pp. 1-16, Frontiers in Immunology, Lausanne, Switzerland, C1-1

Distinct patterns of diversity, population structure and evolution in the AMA1 genes of sympatric Plasmodium falciparum and Plasmodium vivax populations of Papua New Guinea from an area of similarly high transmission

A Arnott, J Wapling, I Mueller, P Ramsland, P Siba, J Reeder, A Barry

(2014), Vol. 13, pp. 1-16, Malaria Journal, London, ENg., C1-1

Genetic diversity of VAR2CSA ID1-DBL2Xb in worldwide Plasmodium falciparum populations: Impact on vaccine design for placental malaria

B Bordbar, N Tuikue Ndam, E Renard, S Jafari-Guemouri, L Tavul, C Jennison, S Gnidehou, R Tahar, D Gamboa, J Bendezu, D Menard, A Barry, P Deloron, A Sabbagh

(2014), Vol. 25, pp. 81-92, Infection, Genetics and Evolution, Amsterdam, The Netherlands, C1-1

Global Population Structure of the Genes Encoding the Malaria Vaccine Candidate, Plasmodium vivax Apical Membrane Antigen 1 (PvAMA1)

A Arnott, I Mueller, P Ramsland, P Siba, J Reeder, A Barry

(2013), Vol. 7, pp. 1-14, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1-1

High genetic diversity of plasmodium vivax on the north coast of papua new guinea

A Arnott, C Barnadas, N Senn, P Siba, I Mueller, J Reeder, A Barry

(2013), Vol. 89, pp. 188-194, American Journal of Tropical Medicine and Hygiene, [Northbrook, Ill.], C1-1

A Large Plasmodium vivax Reservoir and Little Population Structure in the South Pacific

C Koepfli, L Timinao, T Antao, A Barry, P Siba, I Mueller, I Felger

(2013), Vol. 8, pp. 1-9, PLoS ONE, San Francisco, Calif., C1-1

High levels of genetic diversity of Plasmodium falciparum populations in Papua New Guinea despite variable infection prevalence

A Barry, L Schultz, N Senn, J Nale, B Kiniboro, P Siba, I Mueller, J Reeder

(2013), Vol. 88, pp. 718-725, American Journal of Tropical Medicine and Hygiene, [Northbrook, Ill.], C1-1

Hepatitis C Virus Phylogenetic Clustering Is Associated with the Social-Injecting Network in a Cohort of People Who Inject Drugs

R Sacks-Davis, G Daraganova, C Aitken, P Higgs, L Tracy, S Bowden, R Jenkinson, D Rolls, P Pattison, G Robins, J Grebely, A Barry, M Hellard

(2012), Vol. 7, pp. 1-15, PLoS ONE, San Francisco, Calif., C1-1

The Plasmodium falciparum Erythrocyte Invasion Ligand Pfrh4 as a Target of Functional and Protective Human Antibodies against Malaria

L Reiling, J Richards, F Fowkes, D Wilson, W Chokejindachai, A Barry, W Tham, J Stubbs, C Langer, J Donelson, P Michon, L Tavul, B Crabb, P Siba, A Cowman, I Mueller, J Beeson

(2012), Vol. 7, pp. 1-12, PLoS ONE, San Francisco, Calif., C1-1

Understanding the population genetics of Plasmodium vivax is essential for malaria control and elimination

A Arnott, A Barry, J Reeder

(2012), Vol. 11, pp. 1-10, Malaria Journal, London, Eng., C1-1

The stability and complexity of antibody responses to the major surface antigen of Plasmodium falciparum are associated with age in a malaria endemic area

A Barry, A Trieu, F Fowkes, J Pablo, M Kalantari-Dehaghi, A Jasinskas, X Tan, M Kayala, L Tavul, P Siba, K Day, P Baldi, P Felgner, D Doolan

(2011), Vol. 10, pp. 1-13, Molecular and Cellular Proteomics, Bethesda, Md., C1-1

Population genetic analysis of the Plasmodium falciparum 6-cys protein Pf38 in Papua New Guinea reveals domain-specific balancing selection

J Reeder, J Wapling, I Mueller, P Siba, A Barry

(2011), Vol. 10, pp. 1-9, Malaria Journal, London, Eng., C1-1

A molecular epidemiological study of var gene diversity to characterize the reservoir of Plasmodium falciparum in humans in Africa

D Chen, A Barry, A Leliwa-Sytek, T Smith, I Peterson, S Brown, F Migot-Nabias, P Deloron, M Kortok, K Marsh, J Daily, D Ndiaye, O Sarr, S Mboup, K Day

(2011), Vol. 6, pp. 1-12, PLoS ONE, San Francisco, Calif., C1-1

Multilocus haplotypes reveal variable levels of diversity and population structure of Plasmodium falciparum in Papua New Guinea, a region of intense perennial transmission

L Schultz, J Wapling, I Mueller, P Ntsuke, N Senn, J Nale, B Kiniboro, C Buckee, L Tavul, P Siba, J Reeder, A Barry

(2010), Vol. 9, pp. 1-12, Malaria Journal, London, Eng., C1-1

Evidence that the erythrocyte invasion ligand PfRh2 is a target of protective immunity against Plasmodium falciparum malaria

L Reiling, J Richards, F Fowkes, A Barry, T Triglia, W Chokejindachai, P Michon, L Tavul, P Siba, A Cowman, I Mueller, J Beeson

(2010), Vol. 185, pp. 6157-6167, Journal of Immunology, Bethesda, Md., C1-1

Contrasting population structures of the genes encoding ten leading vaccine-candidate antigens of the human malaria parasite, Plasmodium falciparum

A Barry, L Schultz, C Buckee, J Reeder

(2009), Vol. 4, pp. 1-11, PLoS ONE, San Francisco, Calif., C1-1

Genomic heterogeneity in the density of noncoding single-nucleotide and microsatellite polymorphisms in Plasmodium falciparum

S Volkman, E Lozovsky, A Barry, T Bedford, L Bethke, A Myrick, K Day, D Hartl, D Wirth, S Sawyer

(2007), Vol. 387, pp. 1-6, Gene, Amsterdam, The Netherlands, C1-1

Population genomics of the immune evasion (var) genes of Plasmodium falciparum

A Barry, A Leliwa-Sytek, L Tavul, H Imrie, F Migot-Nabias, S Brown, G McVean, K Day

(2007), Vol. 3, pp. 1-9, PLoS Pathogens, San Francisco, Calif., C1-1

Variable SNP density in aspartyl-protease genes of the malaria parasite Plasmodium falciparum

A Barry, A Leliwa-Sytek, K Man, J Kasper, D Hartl, K Day

(2006), Vol. 376, pp. 163-173, Gene, Amsterdam, The Netherlands, C1-1

Malaria epidemiology: Insights from the genome of the malaria parasite

Alyssa Barry

(2005), Vol. 1, pp. 76-86, Journal of Molecular and Genetic Medicine, Oxford, Eng., C1-1

DNA sequence artifacts and the estimation of time to the most recent common ancestor (TMRCA) of Plasmodium falciparum

A Barry, A Leliwa, M Choi, K Nielsen, D Hartl, K Day

(2003), Vol. 130, pp. 143-147, Molecular and Biochemical Parasitology, Amsterdam, The Netherlands, C1-1

The paradoxical population genetics of Plasmodium falciparum

D Hartl, S Volkman, K Nielsen, A Barry, K Day, D Wirth, E Winzeler

(2002), Vol. 18, pp. 266-272, Trends in Parasitology, Amsterdam, The Netherlands, C1-1

Recent origin of Plasmodium falciparum from a single progenitor

S Volkman, A Barry, E Lyons, K Nielsen, S Thomas, M Choi, S Thakore, K Day, D Wirth, D Hartl

(2001), Vol. 293, pp. 482-484, Science, Cambridge, Mass., C1-1

The 10q25 neocentromere and its inactive progenitor have identical primary nucleotide sequence: Further evidence for epigenetic modification

A Barry, M Bateman, E Howman, M Cancilla, K Tainton, D Irvine, R Saffery, K Choo

(2000), Vol. 10, pp. 832-838, Genome Research, Cold Spring Harbor, N.Y., C1-1

Sequence analysis of an 80 kb human neocentromere

A Barry, E Howman, M Cancilla, R Saffery, K Choo

(1999), Vol. 8, pp. 217-227, Human Molecular Genetics, Oxford, Eng., C1-1

Direct cloning of human 10q25 neocentromere DNA using transformation- associated recombination (TAR) in yeast

M Cancilla, K Tainton, A Barry, V Larionov, N Kouprina, M Resnick, D Sart, K Choo

(1998), Vol. 47, pp. 399-404, Genomics, Amsterdam, The Netherlands, C1-1

A functional neo-centromere formed through activation of a latent human centromere and consisting of non-alpha-satellite DNA

D Sart, M Cancilla, E Earle, J Mao, R Saffery, K Tainton, P Kalitsis, J Martyn, A Barry, K Andy Choo

(1997), Vol. 16, pp. 144-153, Nature Genetics, London, Eng., C1-1