Biography
Alyssa Barry is Professor of Systems Epidemiology of Infection with Deakin University’s Institute for Physical and Mental Health and Clinical Translation (IMPACT) and Head of the Translational Genomics Working Group, Burnet Institute where some of her team is based.
Alyssa has been Chief Investigator on six NHMRC Project Grants (four as CIA) and is a Technical Director of a DFAT IndoPacific Centre for Health Security grant supporting the development of molecular surveillance capacity in Papua New Guinea. She leads genomics research in two NIH-funded International Centres for Excellence in Malaria Research (ICEMR) programs in Asia-Pacific and West Africa. She is also a member of the Australian Centre of Research Excellence in Malaria Elimination (ACREME), the Asia Pacific Malaria Elimination Network (APMEN) and the Malaria Genomic Epidemiology Network (MalariaGEN).
Read more on Alyssa's profileCareer highlights
NHMRC/Royal Society Howard Florey Postdoctoral Fellow (2001-3)
NHMRC Howard Florey Centenary Fellow (2006-8)
veski Innovation Fellow (2006)
Georgina Sweet Award for Women in Quantitative Biosciences (2017)
Affiliations
Honourary Principal Research Fellow, Burnet Instiute, Melbourne
Knowledge areas
infectious diseases, malaria, genetics, genomics, immunology, epidemiology, population studies
Projects
Alyssa's research seeks to understand the complex dynamic that exists between host, pathogen and environment that contributes to patterns of exposure, infection and disease. The research explores systems biology on a population level using well-characterised epidemiological studies and has a strong translational focus.
Current projects include:
(i) malaria parasite genomic surveillance to understand transmission dynamics and antimalarial drug resistance and how they change in response to interventions;
(ii) characterising malaria vaccine candidate diversity and how this contributes to immune escape;
(iii) understanding how immunity develops to diverse malaria parasites;
(iv) identifying host and parasite factors contributing to asymptomatic malaria;
(v) metagenomics of Buruli ulcer;
(vi) systems epidemiology of COVID-19 in Western Victoria
The group is using cutting edge technologies to characterise pathogens and their hosts, combining this information with epidemiological data and advanced analytical approaches (bioinformatics, population genetics and biostatistics) to answer key questions in malaria biology and epidemiology. Our work is informing strategies for infectious disease control and elimination including stratification of control efforts, diagnostics, drugs and vaccines.
We work closely with a large network of local and international collaborators including field researchers and malaria control programs. We frequently host trainees for advanced molecular training.
Alyssa’s Deakin/Burnet co-appointment aims to strengthen and expand collaboration in genomics, infectious diseases and microbiome research across the two organisations.
Publications
Pf7: an open dataset of Plasmodium falciparum genome variation in 20,000 worldwide samples
M Abdel Hamid, M Abdelraheem, D Acheampong, A Ahouidi, M Ali, J Almagro-Garcia, A Amambua-Ngwa, C Amaratunga, L Amenga-Etego, B Andagalu, T Anderson, V Andrianaranjaka, I Aniebo, E Aninagyei, F Ansah, P Ansah, T Apinjoh, P Arnaldo, E Ashley, S Auburn, G Awandare, H Ba, V Baraka, A Barry, P Bejon, G Bertin, M Boni, S Borrmann, T Bousema, M Bouyou-Akotet, O Branch, P Bull, H Cheah, K Chindavongsa, T Chookajorn, K Chotivanich, A Claessens, D Conway, V Corredor, E Courtier, A Craig, U D'Alessandro, S Dama, N Day, B Denis, M Dhorda, M Diakite, A Djimde, C Dolecek, A Dondorp, S Doumbia, C Drakeley, E Drury, P Duffy, D Echeverry, T Egwang, S Enosse, B Erko, R Fairhurst, A Faiz, C Fanello, M Fleharty, M Forbes, M Fukuda, D Gamboa, A Ghansah, L Golassa, S Goncalves, G Harrison, S Healy, J Hendry, A Hernandez-Koutoucheva, T Hien, C Hill, F Hombhanje, A Hott, Y Htut, M Hussein, M Imwong, D Ishengoma, S Jackson, C Jacob, J Jeans, K Johnson, C Kamaliddin, E Kamau, J Keatley, T Kochakarn, D Konate, A Konaté, A Kone, D Kwiatkowski, M Kyaw, D Kyle, M Lawniczak, S Lee, M Lemnge, P Lim, C Lon, K Loua
(2023), Vol. 8, pp. 1-27, Wellcome Open Research, London, Eng., C1-1
M Dans, H Piirainen, W Nguyen, S Khurana, S Mehra, Z Razook, N Geoghegan, A Dawson, S Das, M Schneider, T Jonsdottir, M Gabriela, M Gancheva, C Tonkin, V Mollard, C Goodman, G McFadden, D Wilson, K Rogers, A Barry, B Crabb, T de Koning-Ward, B Sleebs, I Kursula, P Gilson
(2023), Vol. 21, pp. 1-34, PLoS Biology, San Francisco, Calif., C1
C Jennison, J Armstrong, D Dankwa, N Hertoghs, S Kumar, B Abatiyow, M Naung, N Minkah, K Swearingen, R Moritz, A Barry, S Kappe, A Vaughan
(2023), pp. 1-19, Molecular Microbiology, London, Eng., C1
A Pyridyl-Furan Series Developed from the Open Global Health Library Block Red Blood Cell Invasion and Protein Trafficking in Plasmodium falciparum through Potential Inhibition of the Parasite's PI4KIIIB Enzyme
D Ling, W Nguyen, O Looker, Z Razook, K McCann, A Barry, C Scheurer, S Wittlin, M Famodimu, M Delves, H Bullen, B Crabb, B Sleebs, P Gilson
(2023), Vol. 9, pp. 1695-1710, ACS infectious diseases, C1-1
J Han, J Munro, A Kocoski, A Barry, M Bahlo
(2022), Vol. 18, pp. 1-18, PLoS Genetics, San Francisco, Calif., C1
M Naung, E Martin, J Munro, S Mehra, A Guy, M Laman, G Harrison, L Tavul, M Hetzel, D Kwiatkowski, I Mueller, M Bahlo, A Barry
(2022), Vol. 18, PLoS Computational Biology, San Francisco, Calif., C1
R Farquhar, A Dori, S MacCana, N Tefuarani, E Lavu, A Barry, S Karl, L Makita, L Robinson, M Laman
(2022), Vol. 20, pp. 2-10, Health research policy and systems, London, England, C1
An open dataset of Plasmodium vivax genome variation in 1,895 worldwide samples
I Adam, M Alam, S Alemu, C Amaratunga, R Amato, V Andrianaranjaka, N Anstey, A Aseffa, E Ashley, A Assefa, S Auburn, B Barber, A Barry, D Batista Pereira, J Cao, N Chau, K Chotivanich, C Chu, A Dondorp, E Drury, D Echeverry, B Erko, F Espino, R Fairhurst, A Faiz, M Fernanda Villegas, Q Gao, L Golassa, S Goncalves, M Grigg, Y Hamedi, T Hien, Y Htut, K Johnson, N Karunaweera, W Khan, S Krudsood, D Kwiatkowski, M Lacerda, B Ley, P Lim, Y Liu, A Llanos-Cuentas, C Lon, T Lopera-Mesa, J Marfurt, P Michon, O Miotto, R Mohammed, I Mueller, C Namaik-larp, P Newton, T Nguyen, F Nosten, R Noviyanti, Z Pava, R Pearson, B Petros, A Phyo, R Price, S Pukrittayakamee, A Rahim, M Randrianarivelojosia, J Rayner, A Rumaseb, S Siegel, V Simpson, K Thriemer, A Tobon-Castano, H Trimarsanto, M Urbano Ferreira, I Vélez, S Wangchuk, T Wellems, N White, T William, M Yasnot, D Yilma
(2022), Vol. 7, pp. 136-136, Wellcome Open Research, England, C1
VIVID: A Web Application for Variant Interpretation and Visualization in Multi-dimensional Analyses
S Tichkule, Y Myung, M Naung, B Ansell, A Guy, N Srivastava, S Mehra, S Cacciò, I Mueller, A Barry, C van Oosterhout, B Pope, D Ascher, A Jex
(2022), Vol. 39, Molecular biology and evolution, United States, C1
S Doumbia, N Sogoba, M Diakite, M Toure, M Keita, D Konaté, S Diawara, A Diarra, D Sanogo, F Kane, S Diakite, K Traore, S Thiam, S Traoré, I Cisse, J Mihigo, M Coulibaly, D Dabitao, M Alifrangis, A Barry, G Müller, J Beier, J Shaffer
(2022), Vol. 107, pp. 75-83, American Journal of Tropical Medicine and Hygiene, United States, C1
The West Africa ICEMR Partnerships for Guiding Policy to Improve the Malaria Prevention and Control
S Doumbia, M Toure, N Sogoba, M Alifrangis, M Diakite, A Diarra, M Keita, D Konaté, S Diawara, S Thiam, S Keita, M Tounkara, I Cissé, V Sanogo, M Magassa, A Barry, P Winch, H Marker, J Shaffer, S Traoré, G Müller, L Cui, J Beier, J Mihigo
(2022), Vol. 107, pp. 84-89, American Journal of Tropical Medicine and Hygiene, United States, C1
Asia-Pacific ICEMR: Understanding Malaria Transmission to Accelerate Malaria Elimination in the Asia Pacific Region
I Mueller, A Vantaux, S Karl, M Laman, B Witkowski, A Pepey, R Vinit, M White, A Barry, J Beeson, L Robinson
(2022), Vol. 107, pp. 131-137, American Journal of Tropical Medicine and Hygiene, United States, C1
A molecular barcode and web-based data analysis tool to identify imported Plasmodium vivax malaria
H Trimarsanto, R Amato, R Pearson, E Sutanto, R Noviyanti, L Trianty, J Marfurt, Z Pava, D Echeverry, T Lopera-Mesa, L Montenegro, A Tobón-Castaño, M Grigg, B Barber, T William, N Anstey, S Getachew, B Petros, A Aseffa, A Assefa, A Rahim, N Chau, T Hien, M Alam, W Khan, B Ley, K Thriemer, S Wangchuck, Y Hamedi, I Adam, Y Liu, Q Gao, K Sriprawat, M Ferreira, M Laman, A Barry, I Mueller, M Lacerda, A Llanos-Cuentas, S Krudsood, C Lon, R Mohammed, D Yilma, D Pereira, F Espino, C Chu, I Vélez, C Namaik-larp, M Villegas, J Green, G Koh, J Rayner, E Drury, S Gonçalves, V Simpson, O Miotto, A Miles, N White, F Nosten, D Kwiatkowski, R Price, S Auburn
(2022), Vol. 5, pp. 1411-, Communications Biology, England, C1
An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples
A Ahouidi, M Ali, J Almagro-Garcia, A Amambua-Ngwa, C Amaratunga, R Amato, L Amenga-Etego, B Andagalu, T Anderson, V Andrianaranjaka, T Apinjoh, C Ariani, E Ashley, S Auburn, G Awandare, H Ba, V Baraka, A Barry, P Bejon, G Bertin, M Boni, S Borrmann, T Bousema, O Branch, P Bull, G Busby, T Chookajorn, K Chotivanich, A Claessens, D Conway, A Craig, U D'Alessandro, S Dama, N Day, B Denis, M Diakite, A Djimdé, C Dolecek, A Dondorp, C Drakeley, E Drury, P Duffy, D Echeverry, T Egwang, B Erko, R Fairhurst, A Faiz, C Fanello, M Fukuda, D Gamboa, A Ghansah, L Golassa, S Goncalves, W Hamilton, G Harrison, L Hart, C Henrichs, T Hien, C Hill, A Hodgson, C Hubbart, M Imwong, D Ishengoma, S Jackson, C Jacob, B Jeffery, A Jeffreys, K Johnson, D Jyothi, C Kamaliddin, E Kamau, M Kekre, K Kluczynski, T Kochakarn, A Konaté, D Kwiatkowski, M Kyaw, P Lim, C Lon, K Loua, O Maïga-Ascofaré, C Malangone, M Manske, J Marfurt, K Marsh, M Mayxay, A Miles, O Miotto, V Mobegi, O Mokuolu, J Montgomery, I Mueller, P Newton, T Nguyen, T Nguyen, H Noedl, F Nosten, R Noviyanti, A Nzila, L Ochola-Oyier
(2021), Vol. 6, pp. 1-31, Wellcome Open Research, London, England, C1
Z Shah, M Naung, K Moser, M Adams, A Buchwald, A Dwivedi, A Ouattara, K Seydel, D Mathanga, A Barry, D Serre, M Laufer, J Silva, S Takala-Harrison
(2021), Vol. 17, PLoS Genetics, United States, C1
Community-based molecular and serological surveillance of subclinical malaria in Myanmar
K O’Flaherty, W Oo, S Zaloumis, J Cutts, K Aung, M Thein, D Drew, Z Razook, A Barry, N Parischa, N Zaw, H Thu, A Thi, W Htay, A Soe, J Simpson, J Beeson, P Agius, F Fowkes
(2021), Vol. 19, BMC Medicine, England, C1
D Lautu-Gumal, Z Razook, T Koleala, E Nate, S McEwen, D Timbi, M Hetzel, E Lavu, N Tefuarani, L Makita, J Kazura, I Mueller, W Pomat, M Laman, L Robinson, A Barry
(2021), Vol. 16, pp. 188-193, International Journal for Parasitology: Drugs and Drug Resistance, Amsterdam, The Netherlands, C1
A Valencia-Hernandez, W Ng, N Ghazanfari, S Ghilas, M de Menezes, L Holz, C Huang, K English, M Naung, P Tan, K Tullett, T Steiner, M Enders, L Beattie, Y Chua, C Jones, A Cozijnsen, V Mollard, Y Cai, D Bowen, A Purcell, N La Gruta, J Villadangos, T de Koning-Ward, A Barry, W Barchet, I Cockburn, G McFadden, S Gras, M Lahoud, P Bertolino, R Schittenhelm, I Caminschi, W Heath, D Fernandez-Ruiz
(2020), Vol. 27, pp. 950-962.e7, Cell Host and Microbe, United States, C1
J Kattenberg, D Gumal, M Ome-Kaius, B Kiniboro, M Philip, S Jally, B Kasian, N Sambale, P Siba, S Karl, A Barry, I Felger, J Kazura, I Mueller, L Robinson
(2020), Vol. 19, Malaria Journal, England, C1
A Brashear, Q Fan, Y Hu, Y Li, Y Zhao, Z Wang, Y Cao, J Miao, A Barry, L Cui
(2020), Vol. 14, pp. 1-23, PLoS Neglected Tropical Diseases, United States, C1
P Agius, J Cutts, W Oo, A Thi, K O’Flaherty, K Aung, H Thu, P Aung, M Thein, N Zaw, W Min Htay, A Soe, Z Razook, A Barry, W Htike, A Devine, J Simpson, B Crabb, J Beeson, N Pasricha, F Fowkes
(2020), Vol. 17, PLoS Medicine, United States, C1
A Fola, E Kattenberg, Z Razook, D Lautu-Gumal, S Lee, S Mehra, M Bahlo, J Kazura, L Robinson, M Laman, I Mueller, A Barry
(2020), Vol. 19, Malaria Journal, England, C1
J Kattenberg, Z Razook, R Keo, C Koepfli, C Jennison, D Lautu-Gumal, A Fola, M Ome-Kaius, C Barnadas, P Siba, I Felger, J Kazura, I Mueller, L Robinson, A Barry
(2020), Vol. 29, pp. 4525-4541, Molecular Ecology, England, C1
O Miotto, M Sekihara, S Tachibana, M Yamauchi, R Pearson, R Amato, S Gonçalves, S Mehra, R Noviyanti, J Marfurt, S Auburn, R Price, I Mueller, M Ikeda, T Mori, M Hirai, L Tavul, M Hetzel, M Laman, A Barry, P Ringwald, J Ohashi, F Hombhanje, D Kwiatkowski, T Mita
(2020), Vol. 16, PLoS Pathogens, United States, C1
M Ome-Kaius, J Kattenberg, S Zaloumis, M Siba, B Kiniboro, S Jally, Z Razook, D Mantila, D Sui, J Ginny, A Rosanas-Urgell, S Karl, T Obadia, A Barry, S Rogerson, M Laman, D Tisch, I Felger, J Kazura, I Mueller, L Robinson
(2019), Vol. 17, BMC Medicine, England, C1
S Tessema, R Nakajima, A Jasinskas, S Monk, L Lekieffre, E Lin, B Kiniboro, C Proietti, P Siba, P Felgner, D Doolan, I Mueller, A Barry
(2019), Vol. 26, pp. 579-590.e5, Cell Host and Microbe, United States, C1
Y Quah, A Waltmann, S Karl, M White, V Vahi, A Darcy, F Pitakaka, M Whittaker, D Tisch, A Barry, C Barnadas, J Kazura, I Mueller
(2019), Vol. 18, Malaria Journal, England, C1
L Henden, S Lee, I Mueller, A Barry, M Bahlo
(2018), Vol. 14, PLoS Genetics, United States, C1
A Waltmann, C Koepfli, N Tessier, S Karl, A Fola, A Darcy, L Wini, G Harrison, C Barnadas, C Jennison, H Karunajeewa, S Boyd, M Whittaker, J Kazura, M Bahlo, I Mueller, A Barry
(2018), Vol. 12, PLoS Neglected Tropical Diseases, United States, C1
S Tessema, D Utama, O Chesnokov, A Hodder, C Lin, G Harrison, J Jespersen, B Petersen, L Tavul, P Siba, D Kwiatkowski, T Lavstsen, D Hansen, A Oleinikov, I Mueller, A Barry
(2018), Vol. 86, Infection and Immunity, United States, C1
O Mitjà, C Godornes, W Houinei, A Kapa, R Paru, H Abel, C González-Beiras, S Bieb, J Wangi, A Barry, S Sanz, Q Bassat, S Lukehart
(2018), Vol. 391, pp. 1599-1607, The Lancet, England, C1
A Fola, E Nate, G Abby Harrison, C Barnadas, M Hetzel, J Iga, P Siba, I Mueller, A Barry
(2018), Vol. 58, pp. 83-95, Infection, Genetics and Evolution, Netherlands, C1
C Godornes, L Giacani, A Barry, O Mitja, S Lukehart
(2017), Vol. 11, PLoS Neglected Tropical Diseases, United States, C1
C Koepfli, M Ome-Kaius, S Jally, E Malau, S Maripal, J Ginny, L Timinao, J Kattenberg, T Obadia, M White, P Rarau, N Senn, A Barry, J Kazura, I Mueller, L Robinson
(2017), Vol. 216, pp. 1434-1443, Journal of Infectious Diseases, Oxford, Eng., C1
K Thriemer, B Ley, A Bobogare, L Dysoley, M Alam, A Pasaribu, J Sattabongkot, E Jambert, G Domingo, R Commons, S Auburn, J Marfurt, A Devine, M Aktaruzzaman, N Sohel, R Namgay, T Drukpa, S Sharma, E Sarawati, I Samad, M Theodora, S Nambanya, S Ounekham, R Mudin, G Da Thakur, L Makita, R Deray, S Lee, L Boaz, M Danansuriya, S Mudiyanselage, N Chinanonwait, S Kitchakarn, J Nausien, E Naket, T Duc, H Do Manh, Y Hong, Q Cheng, J Richards, R Kusriastuti, A Satyagraha, R Noviyanti, X Ding, W Khan, C Swe Phru, Z Guoding, G Qi, A Kaneko, O Miotto, W Nguitragool, W Roobsoong, K Battle, R Howes, A Roca-Feltrer, S Duparc, I Bhowmick, E Kenangalem, J Bibit, A Barry, D Sintasath, R Abeyasinghe, C Sibley, J McCarthy, L Von Seidlein, J Baird, R Price
(2017), Vol. 16, Malaria Journal, England, C1
A Fola, G Harrison, M Hazairin, C Barnadas, M Hetzel, J Iga, P Siba, I Mueller, A Barry
(2017), Vol. 96, pp. 630-641, American Journal of Tropical Medicine and Hygiene, Northbrook, Ill., C1
Dissecting malaria biology and epidemiology using population genetics and genomics
S Auburn, A Barry
(2017), Vol. 47, pp. 77-85, International Journal for Parasitology, Amsterdam, The Netherlands, C1
D Hupalo, Z Luo, A Melnikov, P Sutton, P Rogov, A Escalante, A Vallejo, S Herrera, M Arévalo-Herrera, Q Fan, Y Wang, L Cui, C Lucas, S Durand, J Sanchez, G Christian Baldeviano, A Lescano, M Laman, C Barnadas, A Barry, I Mueller, J Kazura, A Eapen, D Kanagaraj, N Valecha, M Ferreira, W Roobsoong, W Nguitragool, J Sattabonkot, D Gamboa, M Kosek, J Vinetz, L González-Cerón, B Birren, D Neafsey, J Carlton
(2016), Vol. 48, pp. 953-958, Nature Genetics, United States, C1
Genomic analysis of local variation and recent evolution in Plasmodium vivax
R Pearson, R Amato, S Auburn, O Miotto, J Almagro-Garcia, C Amaratunga, S Suon, S Mao, R Noviyanti, H Trimarsanto, J Marfurt, N Anstey, T William, M Boni, C Dolecek, H Tran, N White, P Michon, P Siba, L Tavul, G Harrison, A Barry, I Mueller, M Ferreira, N Karunaweera, M Randrianarivelojosia, Q Gao, C Hubbart, L Hart, B Jeffery, E Drury, D Mead, M Kekre, S Campino, M Manske, V Cornelius, B MacInnis, K Rockett, A Miles, J Rayner, R Fairhurst, F Nosten, R Price, D Kwiatkowski
(2016), Vol. 48, pp. 959-964, Nature Genetics, London, Eng., C1
Implications of Plasmodium vivax biology for control, elimination, and research
P Olliaro, J Barnwell, A Barry, K Mendis, I Mueller, J Reeder, G Shanks, G Snounou, C Wongsrichanalai
(2016), Vol. 95, pp. 4-14, American Journal of Tropical Medicine and Hygiene, United States, C1
Spatial effects on the multiplicity of Plasmodium falciparum infections
S Karl, M White, G Milne, D Gurarie, S Hay, A Barry, I Felger, I Mueller
(2016), Vol. 11, PLoS ONE, United States, C1
Genomic epidemiology of artemisinin resistant malaria
R Amato, O Miotto, C Woodrow, J Almagro-Garcia, I Sinha, S Campino, D Mead, E Drury, M Kekre, M Sanders, A Amambua-Ngwa, C Amaratunga, L Amenga-Etego, V Andrianaranjaka, T Apinjoh, E Ashley, S Auburn, G Awandare, V Baraka, A Barry, M Boni, S Borrmann, T Bousema, O Branch, P Bull, K Chotivanich, D Conway, A Craig, N Day, A Djimdé, C Dolecek, A Dondorp, C Drakeley, P Duffy, D Echeverry, T Egwang, R Fairhurst, A Faiz, C Fanello, T Hien, A Hodgson, M Imwong, D Ishengoma, P Lim, C Lon, J Marfurt, K Marsh, M Mayxay, P Michon, V Mobegi, O Mokuolu, J Montgomery, I Mueller, M Kyaw, P Newton, F Nosten, R Noviyanti, A Nzila, H Ocholla, A Oduro, M Onyamboko, J Ouedraogo, A Phyo, C Plowe, R Price, S Pukrittayakamee, M Randrianarivelojosia, P Ringwald, L Ruiz, D Saunders, A Shayo, P Siba, S Takala-Harrison, T Thanh, V Thathy, F Verra, J Wendler, N White, H Ye, V Cornelius, R Giacomantonio, D Muddyman, C Henrichs, C Malangone, D Jyothi, R Pearson, J Rayner, G McVean, K Rockett, A Miles, P Vauterin, B Jeffery, M Manske, J Stalker, B Macinnis, D Kwiatkowski
(2016), Vol. 5, eLife, England, C1
J Gruszczyk, N Lim, A Arnott, W He, W Nguitragool, W Roobsoong, Y Mok, J Murphy, K Smith, S Lee, M Bahlo, I Mueller, A Barry, W Tham
(2016), Vol. 113, pp. E191-E200, Proceedings of the National Academy of Sciences of the United States of America, Irvine, Calif., C1
A Escalante, M Ferreira, J Vinetz, S Volkman, L Cui, D Gamboa, D Krogstad, A Barry, J Carlton, A van Eijk, K Pradhan, I Mueller, B Greenhouse, M Pacheco, A Vallejo, S Herrera, I Felger
(2015), Vol. 93, pp. 79-86, The American journal of tropical medicine and hygiene, Northbrook, Ill., C1
Designing malaria vaccines to circumvent antigen variability
A Ouattara, A Barry, S Dutta, E Remarque, J Beeson, C Plowe
(2015), Vol. 33, pp. 7506-7512, Vaccine, Amsterdam, The Netherlands, C1
A Waltmann, A Darcy, I Harris, C Koepfli, J Lodo, V Vahi, D Piziki, G Shanks, A Barry, M Whittaker, J Kazura, I Mueller
(2015), Vol. 9, pp. 1-18, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1
C Koepfli, L Robinson, P Rarau, M Salib, N Sambale, R Wampfler, I Betuela, W Nuitragool, A Barry, P Siba, I Felger, I Mueller
(2015), Vol. 10, pp. 1-15, PLoS ONE, San Francisco, Calif., C1
Uncovering the transmission dynamics of Plasmodium vivax using population genetics
A Barry, A Waltmann, C Koepfli, C Barnadas, I Mueller
(2015), Vol. 109, pp. 142-152, Pathogens and Global Health, London, Eng., C1
C Jennison, A Arnott, N Tessier, L Tavul, C Koepfli, I Felger, P Siba, J Reeder, M Bahlo, I Mueller, A Barry
(2015), Vol. 9, pp. 1-20, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1
S Tessema, S Monk, M Schultz, L Tavul, J Reeder, P Siba, I Mueller, A Barry
(2015), Vol. 24, pp. 484-497, Molecular Ecology, London, Eng., C1
C Koepfli, A Barry, S Javati, L Timinao, E Nate, I Mueller, C Barnadas
(2014), Vol. 57, pp. 75-85, Papua and New Guinea medical journal, Port Moresby, New Guinea, C1-1
U Terheggen, D Drew, A Hodder, N Cross, C Mugyenyi, A Barry, R Anders, S Dutta, F Osier, S Elliott, N Senn, D Stanisic, K Marsh, P Siba, I Mueller, J Richards, J Beeson
(2014), Vol. 12, pp. 1-20, BMC Medicine, London, Eng., C1-1
Strategies for designing and monitoring malaria vaccines targeting diverse antigens
A Barry, A Arnott
(2014), Vol. 5, pp. 1-16, Frontiers in Immunology, Lausanne, Switzerland, C1-1
A Arnott, J Wapling, I Mueller, P Ramsland, P Siba, J Reeder, A Barry
(2014), Vol. 13, pp. 1-16, Malaria Journal, London, ENg., C1-1
B Bordbar, N Tuikue Ndam, E Renard, S Jafari-Guemouri, L Tavul, C Jennison, S Gnidehou, R Tahar, D Gamboa, J Bendezu, D Menard, A Barry, P Deloron, A Sabbagh
(2014), Vol. 25, pp. 81-92, Infection, Genetics and Evolution, Amsterdam, The Netherlands, C1-1
A Arnott, I Mueller, P Ramsland, P Siba, J Reeder, A Barry
(2013), Vol. 7, pp. 1-14, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1-1
High genetic diversity of plasmodium vivax on the north coast of papua new guinea
A Arnott, C Barnadas, N Senn, P Siba, I Mueller, J Reeder, A Barry
(2013), Vol. 89, pp. 188-194, American Journal of Tropical Medicine and Hygiene, [Northbrook, Ill.], C1-1
A Large Plasmodium vivax Reservoir and Little Population Structure in the South Pacific
C Koepfli, L Timinao, T Antao, A Barry, P Siba, I Mueller, I Felger
(2013), Vol. 8, pp. 1-9, PLoS ONE, San Francisco, Calif., C1-1
A Barry, L Schultz, N Senn, J Nale, B Kiniboro, P Siba, I Mueller, J Reeder
(2013), Vol. 88, pp. 718-725, American Journal of Tropical Medicine and Hygiene, [Northbrook, Ill.], C1-1
Escaping the immune system: How the malaria parasite makes vaccine development a challenge
D Stanisic, A Barry, M Good
(2013), Vol. 29, pp. 612-622, Trends in Parasitology, Amsterdam, The Netherlands, E1-1
Using Population Genetics to Guide Malaria Vaccine Design
Alyssa Barry, James Beeson, John Reeder, F Fowkes, A Arnott
(2012), pp. 231-264, Malaria Parasites, Rijeka, Croatia, B1-1
R Sacks-Davis, G Daraganova, C Aitken, P Higgs, L Tracy, S Bowden, R Jenkinson, D Rolls, P Pattison, G Robins, J Grebely, A Barry, M Hellard
(2012), Vol. 7, pp. 1-15, PLoS ONE, San Francisco, Calif., C1-1
L Reiling, J Richards, F Fowkes, D Wilson, W Chokejindachai, A Barry, W Tham, J Stubbs, C Langer, J Donelson, P Michon, L Tavul, B Crabb, P Siba, A Cowman, I Mueller, J Beeson
(2012), Vol. 7, pp. 1-12, PLoS ONE, San Francisco, Calif., C1-1
A Arnott, A Barry, J Reeder
(2012), Vol. 11, pp. 1-10, Malaria Journal, London, Eng., C1-1
A Barry, A Trieu, F Fowkes, J Pablo, M Kalantari-Dehaghi, A Jasinskas, X Tan, M Kayala, L Tavul, P Siba, K Day, P Baldi, P Felgner, D Doolan
(2011), Vol. 10, pp. 1-13, Molecular and Cellular Proteomics, Bethesda, Md., C1-1
J Reeder, J Wapling, I Mueller, P Siba, A Barry
(2011), Vol. 10, pp. 1-9, Malaria Journal, London, Eng., C1-1
D Chen, A Barry, A Leliwa-Sytek, T Smith, I Peterson, S Brown, F Migot-Nabias, P Deloron, M Kortok, K Marsh, J Daily, D Ndiaye, O Sarr, S Mboup, K Day
(2011), Vol. 6, pp. 1-12, PLoS ONE, San Francisco, Calif., C1-1
L Schultz, J Wapling, I Mueller, P Ntsuke, N Senn, J Nale, B Kiniboro, C Buckee, L Tavul, P Siba, J Reeder, A Barry
(2010), Vol. 9, pp. 1-12, Malaria Journal, London, Eng., C1-1
L Reiling, J Richards, F Fowkes, A Barry, T Triglia, W Chokejindachai, P Michon, L Tavul, P Siba, A Cowman, I Mueller, J Beeson
(2010), Vol. 185, pp. 6157-6167, Journal of Immunology, Bethesda, Md., C1-1
A Barry, L Schultz, C Buckee, J Reeder
(2009), Vol. 4, pp. 1-11, PLoS ONE, San Francisco, Calif., C1-1
S Volkman, E Lozovsky, A Barry, T Bedford, L Bethke, A Myrick, K Day, D Hartl, D Wirth, S Sawyer
(2007), Vol. 387, pp. 1-6, Gene, Amsterdam, The Netherlands, C1-1
Population genomics of the immune evasion (var) genes of Plasmodium falciparum
A Barry, A Leliwa-Sytek, L Tavul, H Imrie, F Migot-Nabias, S Brown, G McVean, K Day
(2007), Vol. 3, pp. 1-9, PLoS Pathogens, San Francisco, Calif., C1-1
Variable SNP density in aspartyl-protease genes of the malaria parasite Plasmodium falciparum
A Barry, A Leliwa-Sytek, K Man, J Kasper, D Hartl, K Day
(2006), Vol. 376, pp. 163-173, Gene, Amsterdam, The Netherlands, C1-1
Malaria epidemiology: Insights from the genome of the malaria parasite
Alyssa Barry
(2005), Vol. 1, pp. 76-86, Journal of Molecular and Genetic Medicine, Oxford, Eng., C1-1
A Barry, A Leliwa, M Choi, K Nielsen, D Hartl, K Day
(2003), Vol. 130, pp. 143-147, Molecular and Biochemical Parasitology, Amsterdam, The Netherlands, C1-1
The paradoxical population genetics of Plasmodium falciparum
D Hartl, S Volkman, K Nielsen, A Barry, K Day, D Wirth, E Winzeler
(2002), Vol. 18, pp. 266-272, Trends in Parasitology, Amsterdam, The Netherlands, C1-1
Recent origin of Plasmodium falciparum from a single progenitor
S Volkman, A Barry, E Lyons, K Nielsen, S Thomas, M Choi, S Thakore, K Day, D Wirth, D Hartl
(2001), Vol. 293, pp. 482-484, Science, Cambridge, Mass., C1-1
A Barry, M Bateman, E Howman, M Cancilla, K Tainton, D Irvine, R Saffery, K Choo
(2000), Vol. 10, pp. 832-838, Genome Research, Cold Spring Harbor, N.Y., C1-1
Sequence analysis of an 80 kb human neocentromere
A Barry, E Howman, M Cancilla, R Saffery, K Choo
(1999), Vol. 8, pp. 217-227, Human Molecular Genetics, Oxford, Eng., C1-1
M Cancilla, K Tainton, A Barry, V Larionov, N Kouprina, M Resnick, D Sart, K Choo
(1998), Vol. 47, pp. 399-404, Genomics, Amsterdam, The Netherlands, C1-1
D Sart, M Cancilla, E Earle, J Mao, R Saffery, K Tainton, P Kalitsis, J Martyn, A Barry, K Andy Choo
(1997), Vol. 16, pp. 144-153, Nature Genetics, London, Eng., C1-1
Funded Projects at Deakin
Australian Competitive Grants
Genetic determinants of antigenic escape in malaria parasites
A/Prof Alyssa Barry, Dr Shannon Harrison, Prof Takafumi Tsuboi
NHMRC Project Grant
- 2022: $282,902
- 2021: $190,941
- 2020: $354,718
- 2019: $186,703
Defining Host and Parasite Mechanisms that Drive Asymptomatic Malaria
A/Prof Alyssa Barry, A/Prof Leanne Robinson, Prof Takafumi Tsuboi, Prof James Kazura
NHMRC Project Grant
- 2021: $227,643
- 2020: $369,808
- 2019: $47,591
Accelerating to zero: targeting roadblocks to achieve malaria elimination
Dr James Beeson, A/Prof Julie Simpson, Prof Freya Fowkes, A/Prof Leanne Robinson, Prof Ivo Mueller, A/Prof Alyssa Barry
NHMRC Synergy Grants
- 2023: $70,000
Other Public Sector Funding
Stronger Surveillance and Systems Support for Rapid Identification and Containment of Resurgent or Resistant Vector Borne Pathogens in Papua New Guinea (STRIVE PNG)
A/Prof Alyssa Barry
Department of Foreign Affairs and Trade DFAT
- 2021: $57,145
- 2020: $57,865
Long term physical and psychological consequences of Covid-19 infection. A Comparitive Observational Study in Regional Victoria.
Prof Eugene Athan, Dr Darcie Cooper, Prof Peter Vuillermin, Dr Daniel O'Brien, Prof John Stambas, Prof Alister Ward, Prof Michael Berk, Prof Julie Pasco, A/Prof Alyssa Barry, Prof Soren Alexandersen
Department of Jobs, Precincts & Regions
- 2021: $228,000
Industry and Other Funding
Associate Professor of Infection Systems Epidemiology.
A/Prof Alyssa Barry, Prof Alister Ward
Burnet Institute
- 2023: $60,290
- 2022: $78,940
- 2021: $172,492
ICEMR Mali: Multidisciplinary research for malaria control and prevention in West Africa
Prof Seydou Doumbia, A/Prof Alyssa Barry
NIH Grant - Research - National Institutes of Health
- 2021: $51,002
- 2020: $33,348
Supervisions
No completed student supervisions to report