Biography
Alyssa Barry is Professor of Systems Epidemiology of Infection with Deakin University’s Institute for Physical and Mental Health and Clinical Translation (IMPACT) and Head of the Translational Genomics Working Group, Burnet Institute where some of her team is based.
Alyssa has been Chief Investigator on six NHMRC Project Grants (four as CIA) and is a Technical Director of a DFAT IndoPacific Centre for Health Security grant supporting the development of molecular surveillance capacity in Papua New Guinea. She leads genomics research in two NIH-funded International Centres for Excellence in Malaria Research (ICEMR) programs in Asia-Pacific and West Africa. She is also a member of the Australian Centre of Research Excellence in Malaria Elimination (ACREME), the Asia Pacific Malaria Elimination Network (APMEN) and the Malaria Genomic Epidemiology Network (MalariaGEN).
Read more on Alyssa's profileCareer highlights
NHMRC/Royal Society Howard Florey Postdoctoral Fellow (2001-3)
NHMRC Howard Florey Centenary Fellow (2006-8)
veski Innovation Fellow (2006)
Georgina Sweet Award for Women in Quantitative Biosciences (2017)
Affiliations
Honourary Principal Research Fellow, Burnet Instiute, Melbourne
Knowledge areas
infectious diseases, malaria, genetics, genomics, immunology, epidemiology, population studies
Projects
Alyssa's research seeks to understand the complex dynamic that exists between host, pathogen and environment that contributes to patterns of exposure, infection and disease. The research explores systems biology on a population level using well-characterised epidemiological studies and has a strong translational focus.
Current projects include:
(i) malaria parasite genomic surveillance to understand transmission dynamics and antimalarial drug resistance and how they change in response to interventions;
(ii) characterising malaria vaccine candidate diversity and how this contributes to immune escape;
(iii) understanding how immunity develops to diverse malaria parasites;
(iv) identifying host and parasite factors contributing to asymptomatic malaria;
(v) metagenomics of Buruli ulcer;
(vi) systems epidemiology of COVID-19 in Western Victoria
The group is using cutting edge technologies to characterise pathogens and their hosts, combining this information with epidemiological data and advanced analytical approaches (bioinformatics, population genetics and biostatistics) to answer key questions in malaria biology and epidemiology. Our work is informing strategies for infectious disease control and elimination including stratification of control efforts, diagnostics, drugs and vaccines.
We work closely with a large network of local and international collaborators including field researchers and malaria control programs. We frequently host trainees for advanced molecular training.
Alyssa’s Deakin/Burnet co-appointment aims to strengthen and expand collaboration in genomics, infectious diseases and microbiome research across the two organisations.
Publications
Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species
J Han, J Munro, A Kocoski, A Barry, M Bahlo
(2022), Vol. 18, PLoS Genetics, C1
Global diversity and balancing selection of 23 leading Plasmodium falciparum candidate vaccine antigens
M Naung, E Martin, J Munro, S Mehra, A Guy, M Laman, G Harrison, L Tavul, M Hetzel, D Kwiatkowski, I Mueller, M Bahlo, A Barry
(2022), Vol. 18, PLoS Computational Biology, C1
STRIVE PNG: using a partnership-based approach in implementation research to strengthen surveillance and health systems in Papua New Guinea
R Farquhar, A Dori, S MacCana, N Tefuarani, E Lavu, A Barry, S Karl, L Makita, L Robinson, M Laman
(2022), Vol. 20, pp. 2-10, Health research policy and systems, London, England, C1
An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples
A Ahouidi, M Ali, J Almagro-Garcia, A Amambua-Ngwa, C Amaratunga, R Amato, L Amenga-Etego, B Andagalu, T Anderson, V Andrianaranjaka, T Apinjoh, C Ariani, E Ashley, S Auburn, G Awandare, H Ba, V Baraka, A Barry, P Bejon, G Bertin, M Boni, S Borrmann, T Bousema, O Branch, P Bull, G Busby, T Chookajorn, K Chotivanich, A Claessens, D Conway, A Craig, U D'Alessandro, S Dama, N Day, B Denis, M Diakite, A Djimdé, C Dolecek, A Dondorp, C Drakeley, E Drury, P Duffy, D Echeverry, T Egwang, B Erko, R Fairhurst, A Faiz, C Fanello, M Fukuda, D Gamboa, A Ghansah, L Golassa, S Goncalves, W Hamilton, G Harrison, L Hart, C Henrichs, T Hien, C Hill, A Hodgson, C Hubbart, M Imwong, D Ishengoma, S Jackson, C Jacob, B Jeffery, A Jeffreys, K Johnson, D Jyothi, C Kamaliddin, E Kamau, M Kekre, K Kluczynski, T Kochakarn, A Konaté, D Kwiatkowski, M Kyaw, P Lim, C Lon, K Loua, O Maïga-Ascofaré, C Malangone, M Manske, J Marfurt, K Marsh, M Mayxay, A Miles, O Miotto, V Mobegi, O Mokuolu, J Montgomery, I Mueller, P Newton, T Nguyen, T Nguyen, H Noedl, F Nosten, R Noviyanti, A Nzila, L Ochola-Oyier
(2021), Vol. 6, pp. 1-31, Wellcome Open Research, London, England, C1
Z Shah, M Naung, K Moser, M Adams, A Buchwald, A Dwivedi, A Ouattara, K Seydel, D Mathanga, A Barry, D Serre, M Laufer, J Silva, S Takala-Harrison
(2021), Vol. 17, pp. 1-20, PLoS genetics, San Francisco, Calif., C1
Community-based molecular and serological surveillance of subclinical malaria in Myanmar
K O’Flaherty, W Oo, S Zaloumis, J Cutts, K Aung, M Thein, D Drew, Z Razook, A Barry, N Parischa, N Zaw, H Thu, A Thi, W Htay, A Soe, J Simpson, J Beeson, P Agius, F Fowkes
(2021), Vol. 19, pp. 1-12, BMC Medicine, London, Eng., C1
D Lautu-Gumal, Z Razook, T Koleala, E Nate, S McEwen, D Timbi, M Hetzel, E Lavu, N Tefuarani, L Makita, J Kazura, I Mueller, W Pomat, M Laman, L Robinson, A Barry
(2021), Vol. 16, pp. 188-193, International Journal for Parasitology: Drugs and Drug Resistance, Amsterdam, The Netherlands, C1
A Valencia-Hernandez, W Ng, N Ghazanfari, S Ghilas, M de Menezes, L Holz, C Huang, K English, M Naung, P Tan, K Tullett, T Steiner, M Enders, L Beattie, Y Chua, C Jones, A Cozijnsen, V Mollard, Y Cai, D Bowen, A Purcell, N La Gruta, J Villadangos, T de Koning-Ward, A Barry, W Barchet, I Cockburn, G McFadden, S Gras, M Lahoud, P Bertolino, R Schittenhelm, I Caminschi, W Heath, D Fernandez-Ruiz
(2020), Vol. 27, pp. 950-962, Cell Host and Microbe, Amsterdam, The Netherlands, C1
J Kattenberg, D Gumal, M Ome-Kaius, B Kiniboro, M Philip, S Jally, B Kasian, N Sambale, P Siba, S Karl, A Barry, I Felger, J Kazura, I Mueller, L Robinson
(2020), Vol. 19, pp. 1-18, Malaria journal, London, Eng., C1
Awtum Brashear, Qi Fan, Yubing Hu, Yuling Li, Yan Zhao, Zenglei Wang, Yaming Cao, Jun Miao, Alyssa Barry, Liwang Cui
(2020), Vol. 14, pp. 1-23, PLOS Neglected Tropical Diseases, San Francisco, Calif., C1
P Agius, J Cutts, W Oo, A Thi, K O’Flaherty, K Aung, H Thu, P Aung, M Thein, N Zaw, W Min Htay, A Soe, Z Razook, A Barry, W Htike, A Devine, J Simpson, B Crabb, J Beeson, N Pasricha, F Fowkes
(2020), Vol. 17, pp. 1-21, PLoS Medicine, San Francisco, CA, C1
A Fola, E Kattenberg, Z Razook, D Lautu-Gumal, S Lee, S Mehra, M Bahlo, J Kazura, L Robinson, M Laman, I Mueller, A Barry
(2020), Vol. 19, pp. 1-15, Malaria journal, London, Eng., C1
J Kattenberg, Z Razook, R Keo, C Koepfli, C Jennison, D Lautu-Gumal, A Fola, M Ome-Kaius, C Barnadas, P Siba, I Felger, J Kazura, I Mueller, L Robinson, A Barry
(2020), Vol. 29, pp. 4525-4541, Molecular ecology, Chichester, Eng., C1
O Miotto, M Sekihara, S Tachibana, M Yamauchi, R Pearson, R Amato, S Gonçalves, S Mehra, R Noviyanti, J Marfurt, S Auburn, R Price, I Mueller, M Ikeda, T Mori, M Hirai, L Tavul, M Hetzel, M Laman, A Barry, P Ringwald, J Ohashi, F Hombhanje, D Kwiatkowski, T Mita
(2020), Vol. 16, pp. 1-21, PLoS Pathogens, San Francisco, CA, C1
M Ome-Kaius, J Kattenberg, S Zaloumis, M Siba, B Kiniboro, S Jally, Z Razook, D Mantila, D Sui, J Ginny, A Rosanas-Urgell, S Karl, T Obadia, A Barry, S Rogerson, M Laman, D Tisch, I Felger, J Kazura, I Mueller, L Robinson
(2019), Vol. 17, pp. 1-13, BMC Medicine, London, Eng., C1
S Tessema, R Nakajima, A Jasinskas, S Monk, L Lekieffre, E Lin, B Kiniboro, C Proietti, P Siba, P Felgner, D Doolan, I Mueller, A Barry
(2019), Vol. 26, pp. 579-590.e5, Cell Host and Microbe, New York, N.Y., C1
Y Quah, A Waltmann, S Karl, M White, V Vahi, A Darcy, F Pitakaka, M Whittaker, D Tisch, A Barry, C Barnadas, J Kazura, I Mueller
(2019), Vol. 18, pp. 1-15, Malaria Journal, London, Eng., C1
L Henden, S Lee, I Mueller, A Barry, M Bahlo
(2018), Vol. 14, pp. 1-31, PLoS Genetics, San Francisco, Calif., C1
A Waltmann, C Koepfli, N Tessier, S Karl, A Fola, A Darcy, L Wini, G Harrison, C Barnadas, C Jennison, H Karunajeewa, S Boyd, M Whittaker, J Kazura, M Bahlo, I Mueller, A Barry
(2018), Vol. 12, pp. 1-21, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1
S Tessema, D Utama, O Chesnokov, A Hodder, C Lin, G Harrison, J Jespersen, B Petersen, L Tavul, P Siba, D Kwiatkowski, T Lavstsen, D Hansen, A Oleinikov, I Mueller, A Barry
(2018), Vol. 86, pp. 1-14, Infection and Immunity, Washington, D.C., C1
O Mitjà, C Godornes, W Houinei, A Kapa, R Paru, H Abel, C González-Beiras, S Bieb, J Wangi, A Barry, S Sanz, Q Bassat, S Lukehart
(2018), Vol. 391, pp. 1599-1607, The Lancet, London, Eng., C1
A Fola, E Nate, G Abby Harrison, C Barnadas, M Hetzel, J Iga, P Siba, I Mueller, A Barry
(2018), Vol. 58, pp. 83-95, Infection, Genetics and Evolution, Amsterdam, The Netherlands, C1
C Godornes, L Giacani, A Barry, O Mitja, S Lukehart
(2017), Vol. 11, pp. 1-20, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1
C Koepfli, M Ome-Kaius, S Jally, E Malau, S Maripal, J Ginny, L Timinao, J Kattenberg, T Obadia, M White, P Rarau, N Senn, A Barry, J Kazura, I Mueller, L Robinson
(2017), Vol. 216, pp. 1434-1443, Journal of Infectious Diseases, Oxford, Eng., C1
K Thriemer, B Ley, A Bobogare, L Dysoley, M Alam, A Pasaribu, J Sattabongkot, E Jambert, G Domingo, R Commons, S Auburn, J Marfurt, A Devine, M Aktaruzzaman, N Sohel, R Namgay, T Drukpa, S Sharma, E Sarawati, I Samad, M Theodora, S Nambanya, S Ounekham, R Mudin, G Da Thakur, L Makita, R Deray, S Lee, L Boaz, M Danansuriya, S Mudiyanselage, N Chinanonwait, S Kitchakarn, J Nausien, E Naket, T Duc, H Do Manh, Y Hong, Q Cheng, J Richards, R Kusriastuti, A Satyagraha, R Noviyanti, X Ding, W Khan, C Swe Phru, Z Guoding, G Qi, A Kaneko, O Miotto, W Nguitragool, W Roobsoong, K Battle, R Howes, A Roca-Feltrer, S Duparc, I Bhowmick, E Kenangalem, J Bibit, A Barry, D Sintasath, R Abeyasinghe, C Sibley, J McCarthy, L Von Seidlein, J Baird, R Price
(2017), Vol. 16, pp. 1-9, Malaria Journal, London, Eng., C1
A Fola, G Harrison, M Hazairin, C Barnadas, M Hetzel, J Iga, P Siba, I Mueller, A Barry
(2017), Vol. 96, pp. 630-641, American Journal of Tropical Medicine and Hygiene, Northbrook, Ill., C1
Dissecting malaria biology and epidemiology using population genetics and genomics
S Auburn, A Barry
(2017), Vol. 47, pp. 77-85, International Journal for Parasitology, Amsterdam, The Netherlands, C1
D Hupalo, Z Luo, A Melnikov, P Sutton, P Rogov, A Escalante, A Vallejo, S Herrera, M Arévalo-Herrera, Q Fan, Y Wang, L Cui, C Lucas, S Durand, J Sanchez, G Christian Baldeviano, A Lescano, M Laman, C Barnadas, A Barry, I Mueller, J Kazura, A Eapen, D Kanagaraj, N Valecha, M Ferreira, W Roobsoong, W Nguitragool, J Sattabonkot, D Gamboa, M Kosek, J Vinetz, L González-Cerón, B Birren, D Neafsey, J Carlton
(2016), Vol. 48, pp. 953-958, Nature Genetics, London, Eng., C1
Genomic analysis of local variation and recent evolution in Plasmodium vivax
R Pearson, R Amato, S Auburn, O Miotto, J Almagro-Garcia, C Amaratunga, S Suon, S Mao, R Noviyanti, H Trimarsanto, J Marfurt, N Anstey, T William, M Boni, C Dolecek, H Tran, N White, P Michon, P Siba, L Tavul, G Harrison, A Barry, I Mueller, M Ferreira, N Karunaweera, M Randrianarivelojosia, Q Gao, C Hubbart, L Hart, B Jeffery, E Drury, D Mead, M Kekre, S Campino, M Manske, V Cornelius, B MacInnis, K Rockett, A Miles, J Rayner, R Fairhurst, F Nosten, R Price, D Kwiatkowski
(2016), Vol. 48, pp. 959-964, Nature Genetics, London, Eng., C1
Implications of Plasmodium vivax biology for control, elimination, and research
P Olliaro, J Barnwell, A Barry, K Mendis, I Mueller, J Reeder, G Shanks, G Snounou, C Wongsrichanalai
(2016), Vol. 95, pp. 4-14, American Journal of Tropical Medicine and Hygiene, Northbrook, Ill., C1
Spatial effects on the multiplicity of Plasmodium falciparum infections
S Karl, M White, G Milne, D Gurarie, S Hay, A Barry, I Felger, I Mueller
(2016), Vol. 11, pp. 1-20, PLoS ONE, San Francisco, Calif., C1
Genomic epidemiology of artemisinin resistant malaria
R Amato, O Miotto, C Woodrow, J Almagro-Garcia, I Sinha, S Campino, D Mead, E Drury, M Kekre, M Sanders, A Amambua-Ngwa, C Amaratunga, L Amenga-Etego, V Andrianaranjaka, T Apinjoh, E Ashley, S Auburn, G Awandare, V Baraka, A Barry, M Boni, S Borrmann, T Bousema, O Branch, P Bull, K Chotivanich, D Conway, A Craig, N Day, A Djimdé, C Dolecek, A Dondorp, C Drakeley, P Duffy, D Echeverry, T Egwang, R Fairhurst, A Faiz, C Fanello, T Hien, A Hodgson, M Imwong, D Ishengoma, P Lim, C Lon, J Marfurt, K Marsh, M Mayxay, P Michon, V Mobegi, O Mokuolu, J Montgomery, I Mueller, M Kyaw, P Newton, F Nosten, R Noviyanti, A Nzila, H Ocholla, A Oduro, M Onyamboko, J Ouedraogo, A Phyo, C Plowe, R Price, S Pukrittayakamee, M Randrianarivelojosia, P Ringwald, L Ruiz, D Saunders, A Shayo, P Siba, S Takala-Harrison, T Thanh, V Thathy, F Verra, J Wendler, N White, H Ye, V Cornelius, R Giacomantonio, D Muddyman, C Henrichs, C Malangone, D Jyothi, R Pearson, J Rayner, G McVean, K Rockett, A Miles, P Vauterin, B Jeffery, M Manske, J Stalker, B Macinnis, D Kwiatkowski
(2016), Vol. 5, pp. 1-1, eLife, Cambridge, Eng., C1
J Gruszczyk, N Lim, A Arnott, W He, W Nguitragool, W Roobsoong, Y Mok, J Murphy, K Smith, S Lee, M Bahlo, I Mueller, A Barry, W Tham
(2016), Vol. 113, pp. E191-E200, Proceedings of the National Academy of Sciences of the United States of America, Irvine, Calif., C1
A Escalante, M Ferreira, J Vinetz, S Volkman, L Cui, D Gamboa, D Krogstad, A Barry, J Carlton, A van Eijk, K Pradhan, I Mueller, B Greenhouse, M Pacheco, A Vallejo, S Herrera, I Felger
(2015), Vol. 93, pp. 79-86, The American journal of tropical medicine and hygiene, Northbrook, Ill., C1
Designing malaria vaccines to circumvent antigen variability
A Ouattara, A Barry, S Dutta, E Remarque, J Beeson, C Plowe
(2015), Vol. 33, pp. 7506-7512, Vaccine, Amsterdam, The Netherlands, C1
A Waltmann, A Darcy, I Harris, C Koepfli, J Lodo, V Vahi, D Piziki, G Shanks, A Barry, M Whittaker, J Kazura, I Mueller
(2015), Vol. 9, pp. 1-18, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1
C Koepfli, L Robinson, P Rarau, M Salib, N Sambale, R Wampfler, I Betuela, W Nuitragool, A Barry, P Siba, I Felger, I Mueller
(2015), Vol. 10, pp. 1-15, PLoS ONE, San Francisco, Calif., C1
Uncovering the transmission dynamics of Plasmodium vivax using population genetics
A Barry, A Waltmann, C Koepfli, C Barnadas, I Mueller
(2015), Vol. 109, pp. 142-152, Pathogens and Global Health, London, Eng., C1
C Jennison, A Arnott, N Tessier, L Tavul, C Koepfli, I Felger, P Siba, J Reeder, M Bahlo, I Mueller, A Barry
(2015), Vol. 9, pp. 1-20, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1
S Tessema, S Monk, M Schultz, L Tavul, J Reeder, P Siba, I Mueller, A Barry
(2015), Vol. 24, pp. 484-497, Molecular Ecology, London, Eng., C1
C Koepfli, A Barry, S Javati, L Timinao, E Nate, I Mueller, C Barnadas
(2014), Vol. 57, pp. 75-85, Papua and New Guinea medical journal, Port Moresby, New Guinea, C1-1
U Terheggen, D Drew, A Hodder, N Cross, C Mugyenyi, A Barry, R Anders, S Dutta, F Osier, S Elliott, N Senn, D Stanisic, K Marsh, P Siba, I Mueller, J Richards, J Beeson
(2014), Vol. 12, pp. 1-20, BMC Medicine, London, Eng., C1-1
Strategies for designing and monitoring malaria vaccines targeting diverse antigens
A Barry, A Arnott
(2014), Vol. 5, pp. 1-16, Frontiers in Immunology, Lausanne, Switzerland, C1-1
A Arnott, J Wapling, I Mueller, P Ramsland, P Siba, J Reeder, A Barry
(2014), Vol. 13, pp. 1-16, Malaria Journal, London, ENg., C1-1
B Bordbar, N Tuikue Ndam, E Renard, S Jafari-Guemouri, L Tavul, C Jennison, S Gnidehou, R Tahar, D Gamboa, J Bendezu, D Menard, A Barry, P Deloron, A Sabbagh
(2014), Vol. 25, pp. 81-92, Infection, Genetics and Evolution, Amsterdam, The Netherlands, C1-1
A Arnott, I Mueller, P Ramsland, P Siba, J Reeder, A Barry
(2013), Vol. 7, pp. 1-14, PLoS Neglected Tropical Diseases, San Francisco, Calif., C1-1
High genetic diversity of plasmodium vivax on the north coast of papua new guinea
A Arnott, C Barnadas, N Senn, P Siba, I Mueller, J Reeder, A Barry
(2013), Vol. 89, pp. 188-194, American Journal of Tropical Medicine and Hygiene, [Northbrook, Ill.], C1-1
A Large Plasmodium vivax Reservoir and Little Population Structure in the South Pacific
C Koepfli, L Timinao, T Antao, A Barry, P Siba, I Mueller, I Felger
(2013), Vol. 8, pp. 1-9, PLoS ONE, San Francisco, Calif., C1-1
A Barry, L Schultz, N Senn, J Nale, B Kiniboro, P Siba, I Mueller, J Reeder
(2013), Vol. 88, pp. 718-725, American Journal of Tropical Medicine and Hygiene, [Northbrook, Ill.], C1-1
Escaping the immune system: How the malaria parasite makes vaccine development a challenge
D Stanisic, A Barry, M Good
(2013), Vol. 29, pp. 612-622, Trends in Parasitology, Amsterdam, The Netherlands, E1-1
Using population genetics to guide malaria vaccine design
Alyssa Barry, James Beeson, John Reeder, F Fowkes, A Arnott
(2012), pp. 231-264, Malaria Parasites, Rijeka, Croatia, B1-1
R Sacks-Davis, G Daraganova, C Aitken, P Higgs, L Tracy, S Bowden, R Jenkinson, D Rolls, P Pattison, G Robins, J Grebely, A Barry, M Hellard
(2012), Vol. 7, pp. 1-15, PLoS ONE, San Francisco, Calif., C1-1
L Reiling, J Richards, F Fowkes, D Wilson, W Chokejindachai, A Barry, W Tham, J Stubbs, C Langer, J Donelson, P Michon, L Tavul, B Crabb, P Siba, A Cowman, I Mueller, J Beeson
(2012), Vol. 7, pp. 1-12, PLoS ONE, San Francisco, Calif., C1-1
A Arnott, A Barry, J Reeder
(2012), Vol. 11, pp. 1-10, Malaria Journal, London, Eng., C1-1
A Barry, A Trieu, F Fowkes, J Pablo, M Kalantari-Dehaghi, A Jasinskas, X Tan, M Kayala, L Tavul, P Siba, K Day, P Baldi, P Felgner, D Doolan
(2011), Vol. 10, pp. 1-13, Molecular and Cellular Proteomics, Bethesda, Md., C1-1
J Reeder, J Wapling, I Mueller, P Siba, A Barry
(2011), Vol. 10, pp. 1-9, Malaria Journal, London, Eng., C1-1
D Chen, A Barry, A Leliwa-Sytek, T Smith, I Peterson, S Brown, F Migot-Nabias, P Deloron, M Kortok, K Marsh, J Daily, D Ndiaye, O Sarr, S Mboup, K Day
(2011), Vol. 6, pp. 1-12, PLoS ONE, San Francisco, Calif., C1-1
L Schultz, J Wapling, I Mueller, P Ntsuke, N Senn, J Nale, B Kiniboro, C Buckee, L Tavul, P Siba, J Reeder, A Barry
(2010), Vol. 9, pp. 1-12, Malaria Journal, London, Eng., C1-1
L Reiling, J Richards, F Fowkes, A Barry, T Triglia, W Chokejindachai, P Michon, L Tavul, P Siba, A Cowman, I Mueller, J Beeson
(2010), Vol. 185, pp. 6157-6167, Journal of Immunology, Bethesda, Md., C1-1
A Barry, L Schultz, C Buckee, J Reeder
(2009), Vol. 4, pp. 1-11, PLoS ONE, San Francisco, Calif., C1-1
S Volkman, E Lozovsky, A Barry, T Bedford, L Bethke, A Myrick, K Day, D Hartl, D Wirth, S Sawyer
(2007), Vol. 387, pp. 1-6, Gene, Amsterdam, The Netherlands, C1-1
Population genomics of the immune evasion (var) genes of Plasmodium falciparum
A Barry, A Leliwa-Sytek, L Tavul, H Imrie, F Migot-Nabias, S Brown, G McVean, K Day
(2007), Vol. 3, pp. 1-9, PLoS Pathogens, San Francisco, Calif., C1-1
Variable SNP density in aspartyl-protease genes of the malaria parasite Plasmodium falciparum
A Barry, A Leliwa-Sytek, K Man, J Kasper, D Hartl, K Day
(2006), Vol. 376, pp. 163-173, Gene, Amsterdam, The Netherlands, C1-1
Malaria epidemiology: Insights from the genome of the malaria parasite
Alyssa Barry
(2005), Vol. 1, pp. 76-86, Journal of Molecular and Genetic Medicine, Oxford, Eng., C1-1
A Barry, A Leliwa, M Choi, K Nielsen, D Hartl, K Day
(2003), Vol. 130, pp. 143-147, Molecular and Biochemical Parasitology, Amsterdam, The Netherlands, C1-1
The paradoxical population genetics of Plasmodium falciparum
D Hartl, S Volkman, K Nielsen, A Barry, K Day, D Wirth, E Winzeler
(2002), Vol. 18, pp. 266-272, Trends in Parasitology, Amsterdam, The Netherlands, C1-1
Recent origin of Plasmodium falciparum from a single progenitor
S Volkman, A Barry, E Lyons, K Nielsen, S Thomas, M Choi, S Thakore, K Day, D Wirth, D Hartl
(2001), Vol. 293, pp. 482-484, Science, Cambridge, Mass., C1-1
A Barry, M Bateman, E Howman, M Cancilla, K Tainton, D Irvine, R Saffery, K Choo
(2000), Vol. 10, pp. 832-838, Genome Research, Cold Spring Harbor, N.Y., C1-1
Sequence analysis of an 80 kb human neocentromere
A Barry, E Howman, M Cancilla, R Saffery, K Choo
(1999), Vol. 8, pp. 217-227, Human Molecular Genetics, Oxford, Eng., C1-1
M Cancilla, K Tainton, A Barry, V Larionov, N Kouprina, M Resnick, D Sart, K Choo
(1998), Vol. 47, pp. 399-404, Genomics, Amsterdam, The Netherlands, C1-1
D Sart, M Cancilla, E Earle, J Mao, R Saffery, K Tainton, P Kalitsis, J Martyn, A Barry, K Andy Choo
(1997), Vol. 16, pp. 144-153, Nature Genetics, London, Eng., C1-1
An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples
Ambroise Ahouidi, Mozam Ali, Jacob Almagro-Garcia, Alfred Amambua-Ngwa, Chanaki Amaratunga, Roberto Amato, Lucas Amenga-Etego, Ben Andagalu, Tim Anderson, Voahangy Andrianaranjaka, Tobias Apinjoh, Cristina Ariani, Elizabeth Ashley, Sarah Auburn, Gordon Awandare, Hampate Ba, Vito Baraka, Alyssa Barry, Philip Bejon, Gwladys Bertin, Maciej Boni, Steffen Borrmann, Teun Bousema, Oralee Branch, Peter Bull, George Busby, Thanat Chookajorn, Kesinee Chotivanich, Antoine Claessens, David Conway, Alister Craig, Umberto D'Alessandro, Souleymane Dama, Nicholas Day, Brigitte Denis, Mahamadou Diakite, Abdoulaye Djimdé, Christiane Dolecek, Arjen Dondorp, Chris Drakeley, Eleanor Drury, Patrick Duffy, Diego Echeverry, Thomas Egwang, Berhanu Erko, Rick Fairhurst, Abdul Faiz, Caterina Fanello, Mark Fukuda, Dionicia Gamboa, Anita Ghansah, Lemu Golassa, Sonia Goncalves, William Hamilton, G Harrison, Lee Hart, Christa Henrichs, Tran Hien, Catherine Hill, Abraham Hodgson, Christina Hubbart, Mallika Imwong, Deus Ishengoma, Scott Jackson, Chris Jacob, Ben Jeffery, Anna Jeffreys, Kimberly Johnson, Dushyanth Jyothi, Claire Kamaliddin, Edwin Kamau, Mihir Kekre, Krzysztof Kluczynski, Theerarat Kochakarn, Abibatou Konaté, Dominic Kwiatkowski, Myat Kyaw, Pharath Lim, Chanthap Lon, Kovana Loua, Oumou Maïga-Ascofaré, Cinzia Malangone, Magnus Manske, Jutta Marfurt, Kevin Marsh, Mayfong Mayxay, Alistair Miles, Olivo Miotto, Victor Mobegi, Olugbenga Mokuolu, Jacqui Montgomery, Ivo Mueller, Paul Newton, Thuy Nguyen, Thuy-Nhien Nguyen, Harald Noedl, François Nosten, Rintis Noviyanti, Alexis Nzila, Lynette Ochola-Oyier, Harold Ocholla, Abraham Oduro, Irene Omedo, Marie Onyamboko, Jean-Bosco Ouedraogo, Kolapo Oyebola, Richard Pearson, Norbert Peshu, Aung Phyo, Chris Plowe, Ric Price, Sasithon Pukrittayakamee, Milijaona Randrianarivelojosia, Julian Rayner, Pascal Ringwald, Kirk Rockett, Katherine Rowlands, Lastenia Ruiz, David Saunders, Alex Shayo, Peter Siba, Victoria Simpson, Jim Stalker, Xin-zhuan Su, Colin Sutherland, Shannon Takala-Harrison, Livingstone Tavul, Vandana Thathy, Antoinette Tshefu, Federica Verra, Joseph Vinetz, Thomas Wellems, Jason Wendler, Nicholas White, Ian Wright, William Yavo, Htut Ye
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Funded Projects at Deakin
Australian Competitive Grants
Genetic determinants of antigenic escape in malaria parasites
A/Prof Alyssa Barry, Dr Shannon Harrison, Prof Takafumi Tsuboi
NHMRC Project Grant
- 2022: $94,300
- 2021: $190,941
- 2020: $354,718
- 2019: $186,703
Defining Host and Parasite Mechanisms that Drive Asymptomatic Malaria
A/Prof Alyssa Barry, A/Prof Leanne Robinson, Prof Takafumi Tsuboi, Prof James Kazura
NHMRC Project Grant
- 2020: $369,808
- 2019: $47,591
Other Public Sector Funding
Stronger Surveillance and Systems Support for Rapid Identification and Containment of Resurgent or Resistant Vector Borne Pathogens in Papua New Guinea (STRIVE PNG)
A/Prof Alyssa Barry
- 2021: $57,145
- 2020: $57,865
Long term physical and psychological consequences of Covid-19 infection. A Comparitive Observational Study in Regional Victoria.
Prof Eugene Athan, Dr Darcie Cooper, Prof Peter Vuillermin, Dr Daniel O'Brien, Prof John Stambas, Prof Alister Ward, Prof Michael Berk, Prof Julie Pasco, A/Prof Alyssa Barry, Prof Soren Alexandersen
- 2021: $228,000
Industry and Other Funding
Associate Professor of Infection Systems Epidemiology.
A/Prof Alyssa Barry, Prof Alister Ward
- 2022: $39,275
- 2021: $172,492
ICEMR Mali: Multidisciplinary research for malaria control and prevention in West Africa
Prof Seydou Doumbia, A/Prof Alyssa Barry
- 2021: $51,002
- 2020: $33,348
Supervisions
No completed student supervisions to report