Dr Han Ming Gan

STAFF PROFILE

Position

Senior Research Fellow

Faculty

Faculty of Sci Eng & Built Env

Department

School of Life & Env. Sciences

Campus

Geelong Waurn Ponds Campus

Contact

han.gan@deakin.edu.au
+61 3 524 79383, 91365

Publications

Filter by

2019

High-throughput terrestrial biodiversity assessments: mitochondrial metabarcoding, metagenomics or metatranscriptomics?

J Wilson, G Brandon-Mong, H Gan, K Sing

(2019), Vol. 30, pp. 60-67, Mitochondrial DNA Part A: DNA mapping, sequencing, and analysis, Abingdon, Eng., C1

journal

Seawater recirculation through subducting sediments sustains a deeply buried population of sulfate-reducing bacteria

Toni Cox, Han Gan, John Moreau

(2019), Vol. 17, pp. 172-184, Geobiology, Chichester, Eng., C1

journal

Four whole mitogenome sequences of yellowtail stargazers (Uranoscopus cognatus cantor 1849) from East Peninsular Malaysia and West Coast of Thailand

H Gan, M Nur Ilham Syahadah, V Vilasri, M Tun Nurul Aimi, M Tan

(2019), Vol. 4, pp. 256-258, Mitochondrial DNA part b: resources, Abingdon, Eng., C1

journal

Improved genome of Agrobacterium radiobacter type strain provides new taxonomic insight into Agrobacterium genomospecies 4

Han Gan, Melvin Lee, Michael Savka

(2019), Vol. 7, pp. 1-23, PeerJ, Corte Madera, Calif., C1

journal

Two reads to rule them all: nanopore long read-guided assembly of the iconic Christmas Island red crab, Gecarcoidea natalis (Pocock, 1888), mitochondrial genome and the challenges of AT-rich mitogenomes

Han Gan, Stuart Linton, Christopher Austin

(2019), Vol. 45, pp. 64-71, Marine genomics, Amsterdam, The Netherlands, C1

journal

Biodegradation of thiocyanate by a native groundwater microbial consortium

Liam Spurr, Mathew Watts, Han Gan, John Moreau

(2019), Vol. 7, PeerJ, London, Eng., C1

journal

De Novo assembly and characterisation of the greentail prawn (Metapenaeus bennettae) hepatopancreas transcriptome - identification of stress response and detoxification transcripts

Emily Armstrong, Adam Miller, Julie Mondon, Paul Greenfield, Sarah Stephenson, Mun Tan, Han Gan, Sharon Hook

(2019), Vol. 47, pp. 1-10, Marine genomics, Amsterdam, The Netherlands, C1

journal

The male and female complete mitochondrial genomes of the threatened freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758) (Bivalvia: Margaritiferidae)

A Gomes-dos-Santos, E Froufe, R Amaro, P Ondina, S Breton, D Guerra, D Aldridge, I Bolotov, I Vikhrev, H Gan, D Gonalves, A Bogan, R Sousa, D Stewart, A Teixeira, S Varandas, D Zanatta, M Lopes-Lima

(2019), Vol. 4, pp. 1417-1420, Mitochondrial DNA part B: resources, Abingdon, Eng., C1

journal

Microsatellite loci and the complete mitochondrial DNA sequence characterised through next-generation sequencing and de novo genome assembly, and a preliminary assessment of population genetic structure for the Australian crane, Antigone rubicunda

A Miller, I Veltheim, T Nevard, H Gan, M Haase

(2019), Vol. 12, pp. 49-58, Avian biology research, London, Eng., C1

journal

ND5 gene marker reveals recent population expansion of wild pearse's mudskipper (Periophthalmus novemradiatus hamilton) inhabits Setiu wetlands in east Peninsular Malaysia

M Nabilsyafiq, H Gan, A Abd. Mazlan, T Mat Jaafar, M Danish-Daniel, Y Sung, M Tan

(2019), Vol. 48, pp. 87-93, Malaysian applied biology, Selangor, Malaysia, C1

journal

Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication.

Han Gan, Frederic Grandjean, Tom Jenkins, Christopher Austin

(2019), Vol. 20, BMC genomics, London, Eng., C1

journal

Health and saliva microbiomes of a semi-urbanized indigenous tribe in Peninsular Malaysia

L Yeo, F Aghakhanian, J Tan, H Gan, M Phipps

(2019), Vol. 8, pp. 1-20, F1000Research, London, Eng., C1

journal

Mitogenome data of Nycticebus coucang insularis Robinson, 1917 (Primate: Lorisidae)

J Rovie-Ryan, M Gani, Y Lee, H Gan, M Abdullah

(2019), Vol. 25, pp. 1-6, Data in brief, Amsterdam, The Netherlands, C1

journal

Mesozoic mitogenome rearrangements and freshwater mussel (Bivalvia: Unionoidea) macroevolution

E Froufe, I Bolotov, D Aldridge, A Bogan, S Breton, H Gan, U Kovitvadhi, S Kovitvadhi, N Riccardi, G Secci-Petretto, R Sousa, A Teixeira, S Varandas, D Zanatta, A Zieritz, M Fonseca, M Lopes-Lima

(2019), pp. 1-15, Heredity, London, Eng., C1

journal

Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition

M Tan, H Gan, Y Lee, H Bracken-Grissom, T Chan, A Miller, C Austin

(2019), Vol. 9, Scientific reports, London, Eng., C1

journal

Data on whole-genome sequencing of extended-spectrum beta-lactamases producing Enterobacteriaceae isolates from Malaysia

H Gan, W Eng, A Dhanoa

(2019), Vol. 25, pp. 1-4, Data in brief, Amsterdam, The Netherlands, C1

journal

The complete mitochondrial genome of Malayan Gaur (Bos gaurus hubbacki) from Peninsular Malaysia

N Rosli, F Sitam, J Rovie-Ryan, H Gan, Y Lee, H Ithnin, M Gani, M Abdul Razak, B Md-Zain, M Abdullah

(2019), Vol. 4, pp. 2534-2535, Mitochondrial DNA part B: resources, Abingdon, Eng., C1

journal

First genomic insights into carbapenem-resistant Klebsiella pneumoniae from Malaysia

Han Gan, Wilhelm Eng, Amreeta Dhanoa

(2019), pp. 1-22, Journal of Global Antimicrobial Resistance, Amsterdam, The Netherlands, C1

journal

MicroRNA profiling of mouse liver in response to DENV-1 infection by deep sequencing

Lian Pong, Sinikka Parkkinen, Amreeta Dhanoa, Han Gan, Indeevari Wickremesinghe, Sharifah Syed Hassan

(2019), Vol. 7, pp. 1-21, PeerJ, Corte Madera, Calif., C1

journal

The Influence of Modernization and Disease on the Gastric Microbiome of Orang Asli, Myanmars and Modern Malaysians.

Eng Chua, Mun Loke, Selva Gunaletchumy, Han Gan, Kavitha Thevakumar, Chin Tay, Sylvia Young, Than Aye, Win Maw, Mya Aye, Alex Leow, Ahmad Azmi, Sri Kalimuthu, Haji Dahlan, Khean Goh, Jamuna Vadivelu

(2019), Vol. 7, pp. 1-13, Microorganisms, Basel, Switzerland, C1

journal

Insight Into the microbial co-occurrence and diversity of 73 grapevine (Vitis vinifera) crown galls collected across the northern hemisphere

Han Gan, Erno Szegedi, Rabeb Fersi, Samir Chebil, Laszki Kovacs, Akira Kawaguchi, Andre Hudson, Thomas Burr, Michael Savka

(2019), Vol. 10, pp. 1-14, Frontiers in microbiology, Lausanne, Switzerland, C1

journal

Genomic evidence of neo-sex chromosomes in the eastern yellow robin

Han Gan, Stephanie Falk, Hernn Morales, Christopher Austin, Paul Sunnucks, Alexandra Pavlova

(2019), Vol. 8, pp. 1-10, GigaScience, Oxford, Eng., C1

journal

Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)

Han Gan, Mun Tan, Christopher Austin, Craig Sherman, Yen Wong, Jan Strugnell, Mark Gervis, Luke McPherson, Adam Miller

(2019), Vol. 10, FRONTIERS IN GENETICS, C1

journal
2018

Climate-driven mitochondrial selection: a test in Australian songbirds

A Lamb, H Gan, C Greening, L Joseph, Y Lee, A Morn-Ordez, P Sunnucks, A Pavlova

(2018), Vol. 27, pp. 898-918, Molecular ecology, Chichester, Eng., C1

journal

Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly

M Tan, C Austin, M Hammer, Y Lee, L Croft, H Gan

(2018), Vol. 7, pp. 1-6, Gigascience, Oxford, Eng., C1

journal

More limbs on the tree: mitogenome characterisation and systematic position of 'living fossil' species Neoglyphea inopinata and Laurentaeglyphea neocaledonica (Decapoda : Glypheidea : Glypheidae)

M Tan, H Gan, G Dally, S Horner, P Rodrguez Moreno, S Rahman, C Austin

(2018), Vol. 32, pp. 448-456, Invertebrate systematics, Clayton, Vic., C1

journal

Order within the chaos: insights into phylogenetic relationships within the Anomura (Crustacea: Decapoda) from mitochondrial sequences and gene order rearrangements

Mun Tan, Han Gan, Yin Lee, Stuart Linton, Frederic Grandjean, Marlise Bartholomei-Santos, Adam Miller, Christopher Austin

(2018), Vol. 127, pp. 320-331, Molecular phylogenetics and evolution, Amsterdam, The Netherlands, C1

journal

Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae

M Lopes-Lima, I Bolotov, V Do, D Aldridge, M Fonseca, H Gan, M Gofarov, A Kondakov, V Pri, R Sousa, S Varandas, I Vikhrev, A Teixeira, R Wu, X Wu, A Zieritz, E Froufe, A Bogan

(2018), Vol. 127, pp. 98-118, Molecular Phylogenetics and Evolution, Amsterdam, The Netherlands, C1

journal

Time-resolved microbial guild responses to tidal cycling in a coastal acid-sulfate system

Y Ling, H Gan, M Bush, R Bush, J Moreau

(2018), Vol. 15, pp. 2-17, Environmental chemistry, Clayton, Vic., C1

journal

Transcriptome-guided identification of carbohydrate active enzymes (CAZy) from the Christmas Island red crab, Gecarcoidea natalis and a vote for the Inclusion of transcriptome-derived crustacean CAZys in comparative studies

Han Gan, Christopher Austin, Stuart Linton

(2018), Vol. 20, pp. 654-665, Marine biotechnology, New York, N.Y., C1

journal

Microbiome analysis of Pacific white shrimp gut and rearing water from Malaysia and Vietnam: implications for aquaculture research and management

Muhammad Md Zoqratt, Wilhelm Eng, Binh Thai, Christopher Austin, Han Gan

(2018), Vol. 6, PeerJ, London, Eng., C1

journal

Effects of field warming on a High Arctic soil bacterial community: a metagenomic analysis

P Lim, K Newsham, P Convey, H Gan, W Yew, G Tan

(2018), Vol. 115, pp. 1697-1700, Current science, Bangalore, India, C1

journal

Temporal changes in arthropod activity in tropical anthropogenic forests

G-J Brandon-Mong, J Littlefair, K-W Sing, Y-P Lee, H-M Gan, E Clare, J-J Wilson

(2018), Vol. 108, pp. 792-799, Bulletin of entomological research, Cambridge, Eng., C1

journal

Rediscovery of nycticebus coucang insularis Robinson, 1917 (Primates: Lorisidae) at Tioman Island and its mitochondrial genetic assessment

J Rovie-Ryan, M Gani, H Gan, G Bolongon, T Cheng, N Razak, N Rosli, M Aziz, K Matkasim

(2018), Vol. 47, pp. 2533-2542, Sains Malaysiana, Selangor, Malaysia, C1

journal

One more decade of Agrobacterium taxonomy

Han Gan, Michael Savka

(2018), Vol. 418, pp. 1-14, Agrobacterium biology: from basic science to biotechnology, Cham, Switzerland, B1

chapter

Metabolomics and 16S rRNA sequencing of human colorectal cancers and adjacent mucosa

Mun Loke, Eng Chua, Han Gan, Kumar Thulasi, Jane Wanyiri, Iyadorai Thevambiga, Khean Goh, Won Wong, Jamuna Vadivelu

(2018), Vol. 13, PLoS one, San Francisco, Calif., C1

journal
2017

Purifying selection and genetic drift shaped Pleistocene evolution of the mitochondrial genome in an endangered Australian freshwater fish

A Pavlova, H Gan, Y Lee, C Austin, D Gilligan, M Lintermans, P Sunnucks

(2017), Vol. 118, pp. 466-476, Heredity, London, Eng., C1-1

journal

Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda)

M Tan, H Gan, Y Lee, G Poore, C Austin

(2017), Vol. 5, pp. 1-23, PeerJ, London, Eng., C1

journal

Rapid recovery of nuclear and mitochondrial genes by genome skimming from Northern Hemisphere freshwater crayfish

F Grandjean, M Tan, H Gan, Y Lee, T Kawai, R Distefano, M Blaha, A Roles, C Austin

(2017), Vol. 46, pp. 718-728, Zoologica scripta, London, Eng., C1

journal

Elucidating the diet of the island flying fox (Pteropus hypomelanus) in Peninsular Malaysia through Illumina Next-Generation Sequencing

S Aziz, G Clements, L Peng, A Campos-Arceiz, K McConkey, P Forget, H Gan

(2017), Vol. 5, pp. 1-24, PeerJ, London, Eng., C1-1

journal

Disentangling the taxonomy of the Mahseers (Tor spp.) of Malaysia: an integrated approach using morphology, genetics and historical records

S Walton, H Gan, R Raghavan, A Pinder, A Ahmad

(2017), Vol. 25, pp. 171-183, Reviews in fisheries science and aquaculture, Abingdon, Eng., C1-1

journal

Phylogeography of red muntjacs reveals three distinct mitochondrial lineages

R Martins, J Fickel, M Le, T Van Nguyen, H Nguyen, R Timmins, H Gan, J Rovie-Ryan, D Lenz, D Frster, A Wilting

(2017), Vol. 17, pp. 1-12, BMC evolutionary biology, London, Eng., C1-1

journal

Complete genome sequence of Novosphingobium resinovorum SA1, a versatile xenobiotic-degrading bacterium capable of utilizing sulfanilic acid

B Heged?s, P Ks, B Blint, G Marti, H Gan, K Perei, G Rkhely

(2017), Vol. 241, pp. 76-80, Journal of biotechnology, Amsterdam, The Netherlands, C1-1

journal

In-silico taxonomic classification of 373 genomes reveals species misidentification and new genospecies within the genus Pseudomonas

P Tran, M Savka, H Gan

(2017), Vol. 8, pp. 1-7, Frontiers in microbiology, Lausanne, Switzerland, C1

journal

Genomic characterization of eight Ensifer strains isolated from pristine caves and a whole genome phylogeny of Ensifer (Sinorhizobium)

H Kumar, H Gan, M Tan, W Eng, H Barton, A Hudson, M Savka

(2017), Vol. 5, pp. 12-15, Journal of genomics, Sydney, N.S.W., C1-1

journal

De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read

C Austin, M Tan, K Harrisson, Y Lee, L Croft, P Sunnucks, A Pavlova, H Gan

(2017), Vol. 6, pp. 1-6, Gigascience, Oxford, Eng., C1

journal

Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity

K Harrisson, S Amish, A Pavlova, S Narum, M Telonis-Scott, M Rourke, J Lyon, Z Tonkin, D Gilligan, B Ingram, M Lintermans, H Gan, C Austin, G Luikart, P Sunnucks

(2017), pp. 1-43, Molecular ecology, Chichester, Eng., C1

journal

More evolution underground: accelerated mitochondrial substitution rate in Australian burrowing freshwater crayfishes (Decapoda: Parastacidae)

H Gan, M Tan, Y Lee, M Schultz, P Horwitz, Q Burnham, C Austin

(2017), Vol. 118, pp. 88-98, Molecular phylogenetics and evolution, Amsterdam, The Netherlands, C1

journal

Nanopore long-read guided complete genome assembly of Hydrogenophaga intermedia, and genomic insights into 4-aminobenzenesulfonate, p-aminobenzoic acid and hydrogen metabolism in the genus Hydrogenophaga

H Gan, Y Lee, C Austin

(2017), Vol. 8, pp. 1-9, Frontiers in microbiology, Lausanne, Switzerland, C1

journal

Changes in rumen protozoal community by condensed tannin fractions of different molecular weights from a Leucaena leucocephala hybrid in vitro

M Saminathan, H Gan, N Abdullah, C Wong, S Ramiah, H Tan, C Sieo, Y Ho

(2017), Vol. 123, pp. 41-53, Journal of applied microbiology, Chichester, Eng., C1-1

journal

Whole genome sequencing of Rhodotorula mucilaginosa isolated from the chewing stick (Distemonanthus benthamianus): insights into Rhodotorula phylogeny, mitogenome dynamics and carotenoid biosynthesis

H Gan, B Thomas, N Cavanaugh, G Morales, A Mayers, M Savka, A Hudson

(2017), Vol. 5, pp. 1-1, PeerJ, San Diego, Calif., C1

journal

In situ stimulation of thiocyanate biodegradation through phosphate amendment in gold mine tailings water

M Watts, H Gan, L Peng, K L Cao, J Moreau

(2017), Vol. 51, pp. 13353-13362, Environmental science and technology, Washington, D.C., C1

journal

iDNA at sea: recovery of whale shark (Rhincodon typus) mitochondrial DNA sequences from the whale shark copepod (Pandarus rhincodonicus) confirms global population structure

M Meekan, C Austin, M Tan, N Wei, A Miller, S Pierce, D Rowat, G Stevens, T Davies, A Ponzo, H Gan

(2017), Vol. 4, pp. 1-8, Frontiers in marine science, Lausanne, Switzerland, C1

journal

High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia

J Drewes, J White, C Dejea, P Fathi, T Iyadorai, J Vadivelu, A Roslani, E Wick, E Mongodin, M Loke, K Thulasi, H Gan, K Goh, H Chong, S Kumar, J Wanyiri, C Sears

(2017), Vol. 3, npj biofilms and microbiomes, London, Eng., C1-1

journal

Characterization of an autotrophic bioreactor microbial consortium degrading thiocyanate

M Watts, L Spurr, H Gan, J Moreau

(2017), Vol. 101, pp. 5889-5901, Applied microbiology and biotechnology, Berlin, Germany, C1-1

journal

Draft genome sequences of six Enterococcus faecalis strains isolated from Malaysian clinical and environmental origins

D Daniel, H Gan, S Lee, G Dykes, S Rahman

(2017), Vol. 5, Genome announcements, Washington, D.C., C1-1

journal
2016

First comprehensive multi-tissue transcriptome of Cherax quadricarinatus (Decapoda: Parastacidae) reveals unexpected diversity of endogenous cellulase

M Tan, H Gan, H Gan, Y Lee, L Croft, M Schultz, A Miller, C Austin

(2016), Vol. 16, pp. 185-200, Organisms diversity and evolution, Berlin, Germany, C1-1

journal

Pleistocene divergence across a mountain range and the influence of selection on mitogenome evolution in threatened Australian freshwater cod species

K Harrisson, A Pavlova, H Gan, Y Lee, C Austin, P Sunnucks

(2016), Vol. 116, pp. 506-515, Heredity, London, Eng., C1-1

journal

Characterisation of 12 microsatellite loci in the Vietnamese commercial clam Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae) through next-generation sequencing

B Thai, M Tan, Y Lee, H Gan, T Tran, C Austin

(2016), Vol. 43, pp. 391-396, Molecular Biology Reports, Berlin, Germany, C1-1

journal

The complete mitogenome of the endangered white-clawed freshwater crayfish Austropotamobius pallipes (Lereboullet, 1858) (Crustacea: Decapoda: Astacidae)

F Grandjean, M Tan, H Gan, H Gan, C Austin

(2016), Vol. 27, pp. 3329-3330, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

Mitochondrial genomes of the jungle crow Corvus macrorhynchos (Passeriformes: Corvidae) from shed feathers and a phylogenetic analysis of genus Corvus using mitochondrial protein-coding genes

U Krzeminska, R Wilson, S Rahman, B Song, S Seneviratne, H Gan, C Austin

(2016), Vol. 27, pp. 2668-2670, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the New Zealand freshwater crayfish Paranephrops planifrons White 1842 (Crustacea: Decapoda: Parastacidae)

Y Lee, H Gan, M Tan, I Lys, R Page, B Dias Wanigasekera, C Austin

(2016), Vol. 27, pp. 3333-3334, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the giant clam Tridacna squamosa (Heterodonta: Bivalvia: Tridacnidae)

H Gan, H Gan, M Tan, S Penny, R Willan, C Austin

(2016), Vol. 27, pp. 3220-3221, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the bluespotted ribbontail ray Taeniura lymma (Forsskl, 1775) (Elasmobranchii: Myliobatiformes: Dasyatidae)

C Austin, M Tan, L Croft, M Meekan, H Gan, H Gan

(2016), Vol. 27, pp. 3205-3207, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the Australian freshwater shrimp Paratya australiensis Kemp, 1917 (Crustacea: Decapoda: Atyidae)

H Gan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 3157-3158, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the rock pool prawn Palaemon serenus (Heller, 1862) (Crustacea: Decapoda: Palaemonidae)

H Gan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 3155-3156, Mitochondrial DNA part A, London, Eng., C1-1

journal

The complete mitogenome of the invasive spiny-cheek crayfish Orconectes limosus (Rafinesque, 1817) (Crustacea: Decapoda: Cambaridae)

H Gan, H Gan, Y Lee, F Grandjean, C Austin

(2016), Vol. 27, pp. 3181-3183, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the Norway lobster Nephrops norvegicus (Linnaeus, 1758) (Crustacea: Decapoda: Nephropidae)

H Gan, M Tan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 3179-3180, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the minute mudskipper, Periophthalmus minutus Eggert, 1935 (Perciformes: Gobiidae: Oxudercinae)

H Gan, M Tan, Y Lee, M Hammer, C Austin

(2016), Vol. 27, pp. 4187-4188, Mitochondrial DNA part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the hermit crab Clibanarius infraspinatus (Hilgendorf, 1869), (Crustacea; Decapoda; Diogenidae) - a new gene order for the Decapoda

H Gan, H Gan, M Tan, Y Lee, C Austin

(2016), Vol. 27, pp. 4099-4100, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the endangered freshwater crayfish Cherax tenuimanus (Smith 1912) (Crustacea: Decapoda: Parastacidae)

C Austin, M Tan, H Gan, H Gan

(2016), Vol. 27, pp. 4176-4177, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the porcelain crab Petrolisthes haswelli Miers, 1884 (Crustacea: Decapoda: Anomura)

M Tan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 3983-3984, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of purple mottled shore crab Cyclograpsus granulosus H. Milne-Edwards, 1853 (Crustacea: Decapoda: Grapsoidea)

M Tan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 3981-3982, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitochondrial genome of the bass yabby Trypaea australiensis Dana 1852, (Crustacea; Decapoda; Callianassidae) - a new gene order for the Decapoda

H Gan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 3985-3986, Mitochondrial DNA part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the river blackfish, Gadopsis marmoratus (Richardson, 1848) (Teleostei: Percichthyidae)

H Gan, M Tan, Y Lee, C Austin

(2016), Vol. 27, pp. 2030-2031, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the soldier crab Mictyris longicarpus (Latreille, 1806) (Crustacea: Decapoda: Mictyridae)

M Tan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 2121-2122, Mitochondrial DNA Part a, Abingdon, Eng., C1-1

journal

The complete mitogenome of the ghost crab Ocypode ceratophthalmus (Pallas, 1772) (Crustacea: Decapoda: Ocypodidae)

M Tan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 2123-2124, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the Morton Bay bug Thenus orientalis (Lund, 1793) (Crustacea: Decapoda: Scyllaridae) from a cooked sample and a new mitogenome order for the Decapoda

M Tan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 1277-1278, Mitochondrial DNA part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the Australian tadpole shrimp Triops australiensis (Spencer & Hall, 1895) (Crustacea: Branchiopoda: Notostraca)

H Gan, M Tan, Y Lee, C Austin

(2016), Vol. 27, pp. 2028-2029, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the moon crab Ashtoret lunaris (Forskal, 1775), (Crustacea; Decapoda; Matutidae)

M Tan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 1313-1314, Mitochondrial DNA part a, Abingdon, Eng., C1-1

journal

The complete mitogenome of the swimming crab Thalamita crenata (Rppell, 1830) (Crustacea; Decapoda; Portunidae)

M Tan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 1275-1276, Mitochondrial DNA part a, Abingdon, Eng., C1-1

journal

The complete mitogenome of the stone crab Myomenippe fornasinii (Bianconi, 1851) (Crustacea: Decapoda: Menippidae)

M Tan, H Gan, Y Lee, C Austin

(2016), Vol. 27, pp. 1374-1375, Mitochondrial DNA part a, Abingdon, Eng., C1-1

journal

The complete mitogenome of the cow tail ray Pastinachus atrus (Macleay, 1883) (Elasmobranchii; Myliobatiformes; Dasyatidae)

C Austin, M Tan, Y Lee, L Croft, M Meekan, H Gan

(2016), Vol. 27, pp. 1372-1373, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitochondrial genome of the invasive house crow Corvus splendens (Passeriformes: Corvidae)

U Krzeminska, R Wilson, S Rahman, B Song, H Gan, M Tan, C Austin

(2016), Vol. 27, pp. 974-975, Mitochondrial DNA part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the Australian spiny crayfish Euastacus yarraensis (McCoy, 1888) (Crustacea: Decapoda: Parastacidae)

H Gan, M Tan, C Austin

(2016), Vol. 27, pp. 929-930, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the Murray Cod, Maccullochella peelii (Mitchell, 1838) (Teleostei: Percichthyidae)

C Austin, M Tan, Y Lee, L Croft, H Gan

(2016), Vol. 27, pp. 729-730, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the whale shark parasitic copepod Pandarus rhincodonicus norman, Newbound & Knott (Crustacea; Siphonostomatoida; Pandaridae) - a new gene order for the copepoda

C Austin, M Tan, Y Lee, L Croft, M Meekan, S Pierce, H Gan

(2016), Vol. 27, pp. 694-695, Mitochondrial DNA part a, Abingdon, Eng., C1-1

journal

The complete mitogenome of the Australian crayfish Geocharax gracilis Clark 1936 (Crustacea: Decapoda: Parastacidae)

H Gan, M Tan, H Gan, Y Lee, M Schultz, C Austin

(2016), Vol. 27, pp. 826-827, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the Macquarie perch, Macquaria australasica Cuvier, 1830 (Teleostei: Percichthyidae)

H Gan, M Tan, C Austin

(2016), Vol. 27, pp. 383-384, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the red claw crayfish Cherax quadricarinatus (Von Martens, 1868) (Crustacea: Decapoda: Parastacidae)

H Gan, M Tan, C Austin

(2016), Vol. 27, pp. 385-386, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the Australian land crayfish Engaeus lyelli (Clark 1936) (Crustacea: Decapoda: Parastacidae)

H Gan, M Tan, Y Lee, M Schultz, C Austin

(2016), Vol. 27, pp. 595-596, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of Cherax monticola (Crustacea: Decapoda: Parastacidae), a large highland crayfish from New Guinea

H Gan, M Tan, R Eprilurahman, C Austin

(2016), Vol. 27, pp. 337-338, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the marine bivalve Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae)

H Gan, M Tan, B Thai, C Austin

(2016), Vol. 27, pp. 335-336, Mitochondrial DNA part a, Abingdon, Eng., C1-1

journal

The complete mitogenome of the freshwater crayfish Cherax cainii (Crustacea: Decapoda: Parastacidae)

C Austin, M Tan, L Croft, H Gan

(2016), Vol. 27, pp. 126-127, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

The complete mitogenome of the crayfish Cherax glaber (Crustacea: Decapoda: Parastacidae)

C Austin, M Tan, L Croft, H Gan

(2016), Vol. 27, pp. 220-221, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

journal

Genetic diversity of Enterococcus faecalis isolated from environmental, animal and clinical sources in Malaysia

D Daniel, S Lee, H Gan, G Dykes, S Rahman

(2016), Vol. 10, pp. 617-623, Journal of infection and public health, Amsterdam, The Netherlands, C1-1

journal

A newly identified population of Gambusia affinis (Baird and Girard, 1853), a non-native invasive species, in Lake Kenyir, Malaysia: implications for management

S Walton, A Ahmad, H Gan, J Bolland

(2016), Vol. 5, pp. 107-114, Bioinvasions records, Helsinki, Finland, C1-1

journal

Field calibration of blowfly-derived DNA against traditional methods for assessing mammal diversity in tropical forests

P-S Lee, H Gan, G Clements, J-J Wilson

(2016), Vol. 59, pp. 1008-1022, Genome, Ottawa, Ont., C1-1

journal

Genome sequencing-assisted identification and the first functional validation of N-acyl-homoserine-lactone synthases from the Sphingomonadaceae family

H Gan, L Dailey, N Halliday, P Williams, A Hudson, M Savka

(2016), Vol. 2016, pp. 1-20, PeerJ, London, Eng., C1-1

journal

Impact of dengue virus (DENV) co-infection on clinical manifestations, disease severity and laboratory parameters

A Dhanoa, S Hassan, C Ngim, C Lau, T Chan, N Adnan, W Eng, H Gan, G Rajasekaram

(2016), Vol. 16, pp. 1-14, BMC infectious diseases, London, Eng., C1-1

journal

Modulatory effects of condensed tannin fractions of different molecular weights from a Leucaena leucocephala hybrid on the bovine rumen bacterial community in vitro

M Saminathan, C Sieo, H Gan, S Ravi, K Venkatachalam, N Abdullah, C Wong, Y Ho

(2016), Vol. 96, pp. 4565-4574, Journal of the science of food and agriculture, Chichester, Eng., C1-1

journal

Identification and partial characterization of a novel UDP-N-acetylenolpyruvoylglucosamine reductase/UDP-N-acetylmuramate: L-alanine ligase fusion enzyme from Verrucomicrobium spinosum DSM 4136T

K Naqvi, D Patin, M Wheatley, M Savka, R Dobson, H Gan, H Barreteau, D Blanot, D Mengin-Lecreulx, A Hudson

(2016), Vol. 7, pp. 1-13, Frontiers in microbiology, Lausanne, Switzerland, C1-1

journal

Global MLST of Salmonella Typhi revisited in post-genomic era: genetic conservation, population structure, and comparative genomics of rare sequence types

K Yap, W Ho, H Gan, L Chai, K Thong

(2016), Vol. 7, pp. 1-12, Frontiers in microbiology, Lausanne, Switzerland, C1-1

journal

Effects of condensed tannin fractions of different molecular weights on population and diversity of bovine rumen methanogenic archaea in vitro, as determined by high-throughput sequencing

M Saminathan, C Sieo, H Gan, N Abdullah, C Wong, Y Ho

(2016), Vol. 216, pp. 146-160, Animal feed science and technology, Amsterdam, The Netherlands, C1-1

journal

Helicobacter pylori eradication causes perturbation of the human gut microbiome in young adults

T Yap, H-M Gan, Y-P Lee, A Leow, A Azmi, F Francois, G Perez-Perez, M-F Loke, K-L Goh, J Vadivelu

(2016), Vol. 11, pp. 1-20, PLoS one, San Francisco, Calif., C1-1

journal
2015

Whole genome sequencing of the Asian Arowana (Scleropages formosus) provides insights into the evolution of ray-finned fishes

C Austin, M Tan, L Croft, M Hammer, H Gan

(2015), Vol. 7, pp. 2885-2895, Genome biology and evolution, Oxford, Eng., C1-1

journal

MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes

M Tan, H Gan, M Schultz, C Austin

(2015), Vol. 85, pp. 180-188, Molecular phylogenetics and evolution, Amsterdam, The Netherlands, C1-1

journal

DNA metabarcoding of insects and allies: an evaluation of primers and pipelines

G-J Brandon-Mong, H-M Gan, K-W Sing, P-S Lee, P-E Lim, J-J Wilson

(2015), Vol. 105, pp. 717-727, Bulletin of entomological research, Cambridge, Eng., C1-1

journal

Crustal fluid and ash alteration impacts on the biosphere of Shikoku Basin sediments, Nankai Trough, Japan

M Torres, T Cox, W-L Hong, J McManus, J Sample, C Destrigneville, H Gan, H Gan, J Moreau

(2015), Vol. 13, pp. 562-580, Geobiology, Chichester, Eng., C1-1

journal

Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses

M Mohd Shaufi, C Sieo, C Chong, H Gan, Y Ho

(2015), Vol. 7, pp. 1-12, Gut pathogens, London, Eng., C1-1

journal

Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family

H Gan, H Gan, N Ahmad, N Aziz, A Hudson, M Savka

(2015), Vol. 4, pp. 1-14, Frontiers in cellular and infection microbiology, Lausanne, Switzerland, C1-1

journal
2014

Draft genome sequence of Clostridium perfringens strain JJC, a highly efficient hydrogen producer isolated from landfill leachate sludge

Y Wong, J Juan, H Gan, C Austin

(2014), Vol. 2, pp. 1-2, Genome announcements, Washington, D.C., C1-1

journal

Draft genome sequence of Clostridium bifermentans strain WYM, a promising biohydrogen producer isolated from landfill leachate sludge

Y Wong, J Juan, H Gan, C Austin

(2014), Vol. 2, Genome announcements, Washington, D.C., C1-1

journal

Draft genome sequence of Clostridium sp. Strain Ade.TY, a new biohydrogen- and biochemical-producing bacterium isolated from landfill leachate sludge

Y Wong, J Juan, A Ting, T Wu, H Gan, C Austin

(2014), Vol. 2, pp. 1-2, Genome announcements, Washington, D.C., C1-1

journal

Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes

H Gan, M Schultz, C Austin

(2014), Vol. 14, pp. 1-8, Genome biology and evolution, London, Eng., C1-1

journal

Analysis of Anoxybacillus genomes from the aspects of lifestyle adaptations, prophage diversity, and carbohydrate metabolism

K Goh, H Gan, K-G Chan, G Chan, S Shahar, C Chong, U Kahar, K Chai

(2014), Vol. 9, pp. 1-15, PLoS one, San Francisco, Calif., C1-1

journal

Comparative genomics of closely related Salmonella enterica serovar Typhi strains reveals genome dynamics and the acquisition of novel pathogenic elements

K-P Yap, H Gan, C Teh, L Chai, K Thong

(2014), Vol. 15, pp. 1-20, BMC genomics, London, Eng., C1-1

journal

Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine

J Sulaiman, H Gan, W-F Yin, K-G Chan

(2014), Vol. 5, pp. 1-9, Frontiers in microbiology, Lausanne, Switzerland, C1-1

journal

L,L-diaminopimelate aminotransferase (DapL): a putative target for the development of narrow-spectrum antibacterial compounds

A Triassi, M Wheatley, M Savka, H Gan, R Dobson, A Hudson

(2014), Vol. 5, pp. 1-10, Frontiers in microbiology, Lausanne, Switzerland, C1-1

journal
2013

Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation

H Gan, A Hudson, A Rahman, K Chan, M Savka

(2013), Vol. 14, pp. 1-14, BMC genomics, London, Eng., C1-1

journal

The complete genome sequence of EC1-UPM, a novel N4-like bacteriophage that infects Escherichia coli O78:K80

H Gan, C Sieo, S Tang, A Omar, Y Ho

(2013), Vol. 10, pp. 1-8, Virology journal, London, Eng., C1-1

journal
2012

Cloning and functional analysis of the genes coding for 4-aminobenzenesulfonate 3,4-dioxygenase from Hydrogenophaga sp. PBC

H Gan, S Shahir, A Yahya

(2012), Vol. 158, pp. 1933-1941, Microbiology, Reading, Eng., C1-1

journal
2011

Identification of genes involved in the 4-aminobenzenesulfonate degradation pathway of Hydrogenophaga sp. PBC via transposon mutagenesis

H Gan, Z Ibrahim, S Shahir, A Yahya

(2011), Vol. 318, pp. 108-114, Fems microbiology letters, Oxford, Eng., C1-1

journal

Biodegradation of 4-aminobenzenesulfonate by Ralstonia sp. PBA and Hydrogenophaga sp. PBC isolated from textile wastewater treatment plant

H Gan, S Shahir, Z Ibrahim, A Yahya

(2011), Vol. 82, pp. 507-513, Chemosphere, Amsterdam, The Netherlands, C1-1

journal
2009

Quorum-sensing signal production by Agrobacterium vitis strains and their tumor-inducing and tartrate-catabolic plasmids.

N Lowe, H Gan, V Chakravartty, R Scott, E Szegedi, T Burr, M Savka

(2009), Vol. 296, pp. 102-109, Fems Microbiology Letters, England, C1-1

journal

Identification of an rsh gene from a Novosphingobium sp. necessary for quorum-sensing signal accumulation

H Gan, L Buckley, E Szegedi, A Hudson, M Savka

(2009), Vol. 191, pp. 2551-2560, Journal of bacteriology, United States, C1-1

journal

Funded Projects at Deakin

Other Public Sector Funding

National Marine Pest Reference Sequencing Project.

Dr Craig Sherman, Dr Adam Miller, Dr Han Ming Gan

  • 2019: $18,181

Supervisions

Associate Supervisor
2019

Mun Hua Tan

Thesis entitled: Comparative Mitogenomics and Phylogenetics of Decapod Crustaceans

Doctor of Philosophy (Life & Env), School of Life and Environmental Sciences