A/Prof. Larry Croft

The NGS Magic Pudding: A Nanopore-Led Long-Read Genome Assembly for the Commercial Australian Freshwater Crayfish, Cherax destructor

C Austin, L Croft, F Grandjean, H Gan

(2022), Vol. 12, pp. 1-8, Frontiers in Genetics, Lausanne, Switzerland, C1

Methylomic and transcriptomic characterization of postoperative systemic inflammatory dysregulation

C Bain, P Myles, R Taylor, H Trahair, Y Lee, L Croft, P Peyton, T Painter, M Chan, S Wallace, T Corcoran, A Shaw, E Paul, M Ziemann, K Bozaoglu

(2022), Vol. 247, pp. 79-98, Translational Research: the journal of laboratory and clinical medicine, Amsterdam, The Netherlands, C1

Whole genome resequencing reveals signatures of rapid selection in a virus-affected commercial fishery

O Holland, M Toomey, C Ahrens, A Hoffmann, L Croft, C Sherman, A Miller

(2022), Vol. 31, pp. 3658-3671, Molecular Ecology, London, Eng., C1

Epithelial de-differentiation triggered by co-ordinate epigenetic inactivation of the EHF and CDX1 transcription factors drives colorectal cancer progression

I Luk, L Jenkins, K Schoffer, I Ng, J Tse, D Mouradov, S Kaczmarczyk, R Nightingale, A Burrows, R Anderson, D Arango, H Dopeso, L Croft, M Richardson, O Sieber, Y Liao, J Mooi, N Vukelic, D Williams, A Dhillon

(2022), Vol. 29, pp. 2288-2302, Cell Death and Differentiation, London, Eng., C1

A turn in species conservation for hairpin banksias: demonstration of oversplitting leads to better management of diversity

T Wilson, M Rossetto, D Bain, J Yap, P Wilson, M Stimpson, P Weston, L Croft

(2022), Vol. 109, pp. 1652-1671, American Journal of Botany, C1

First Genome of Labyrinthula sp., an Opportunistic Seagrass Pathogen, Reveals Novel Insight into Marine Protist Phylogeny, Ecology and CAZyme Cell-Wall Degradation

M Tan, S Loke, L Croft, F Gleason, L Lange, B Pilgaard, S Trevathan-Tackett

(2021), Vol. 82, pp. 498-511, Microbial Ecology, United States, C1

Description and detection of excludons as transcriptional regulators in gram-positive, gram-negative and archaeal strains of prokaryotes

J Chia, K Khoo, T Ling, L Croft, S Manickam, Y Yap, P Show

(2021), Vol. 32, pp. 1-6, Biocatalysis and Agricultural Biotechnology, Amsterdam, The Netherlands, C1

Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study

K Livingstone, M Tan, G Abbott, R Duckham, L Croft, J Ward, M McEvoy, M Keske, C Austin, S Bowe

(2021), Vol. 12, Frontiers in Endocrinology, Switzerland, C1

The impact of infectious diseases consultation on the management and outcomes of Pseudomonas aeruginosa bacteraemia in adults: a retrospective cohort study

F Chiong, M Wasef, K Liew, R Cowan, D Tsai, Y Lee, L Croft, O Harris, S Gwini, E Athan

(2021), Vol. 21, BMC Infectious Diseases, England, C1

A Giant Genome for a Giant Crayfish (Cherax quadricarinatus) With Insights Into cox1 Pseudogenes in Decapod Genomes

M Tan, H Gan, Y Lee, F Grandjean, L Croft, C Austin

(2020), Vol. 11, Frontiers in Genetics, Switzerland, C1

Dataset for genome sequencing and de novo assembly of the Vietnamese bighead catfish (Clarias macrocephalus Günther, 1864)

T Duong, M Tan, Y Lee, L Croft, C Austin

(2020), Vol. 31, Data in Brief, Netherlands, C1

Chitinophaga extrema sp. nov., isolated from subsurface soil and leaf litter in a tropical peat swamp forest

Calvin Goh, Li Wong, Sivachandran Parimannan, Heera Rajandas, Stella Loke, Lawrence Croft, Catherine Yule, Pooria Pasbakhsh, Sui Lee, Joash Tan

(2020), Vol. 70, pp. 6355-6363, International journal of systematic and evolutionary microbiology, London, Eng., C1

New insights on the evolution of the sweet taste receptor of primates adapted to harsh environments

N Tamrin, R Zainudin, Y Esa, H Alias, M Isa, L Croft, M Abdullah

(2020), Vol. 10, pp. 1-16, Animals, Basel, Switzerland, C1

Chromosome-level alpaca reference genome VicPac3.1 improves genomic insight into the biology of new world camelids

M Richardson, K Munyard, L Croft, T Allnutt, F Jackling, F Alshanbari, M Jevit, G Wright, R Cransberg, A Tibary, P Perelman, B Appleton, T Raudsepp

(2019), Vol. 10, pp. 1-15, Frontiers in genetics, Lausanne, Switzerland, C1

Insights into microbial community structure and diversity in oil palm waste compost

N Khalid, H Rajandas, S Parimannan, L Croft, S Loke, C Chong, N Bruce, A Yahya

(2019), Vol. 9, pp. 1-11, 3 Biotech, Cham, Switzerland, C1

Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium

Suganniiya Ravintheran, Sumitra Sivaprakasam, Stella Loke, Su Lee, Ravichandran Manickam, Adibah Yahya, Lawrence Croft, Andrew Millard, Sivachandran Parimannan, Heera Rajandas

(2019), Vol. 6, pp. 1-6, Scientific data, C1

Whole Genome Assembly of the Snout Otter Clam, Lutraria rhynchaena, Using Nanopore and Illumina Data, Benchmarked Against Bivalve Genome Assemblies

B Thai, Y Lee, H Gan, C Austin, L Croft, T Trieu, M Tan

(2019), Vol. 10, Frontiers in Genetics, Switzerland, C1

Finding Nemo: Hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly

M Tan, C Austin, M Hammer, Y Lee, L Croft, H Gan

(2018), Vol. 7, pp. 1-6, GigaScience, United States, C1

De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read

C Austin, M Tan, K Harrisson, Y Lee, L Croft, P Sunnucks, A Pavlova, H Gan

(2017), Vol. 6, GigaScience, United States, C1

First comprehensive multi-tissue transcriptome of Cherax quadricarinatus (Decapoda: Parastacidae) reveals unexpected diversity of endogenous cellulase

M Tan, H Gan, H Gan, Y Lee, L Croft, M Schultz, A Miller, C Austin

(2016), Vol. 16, pp. 185-200, Organisms diversity and evolution, Berlin, Germany, C1-1

The complete mitogenome of the bluespotted ribbontail ray Taeniura lymma (Forsskål, 1775) (Elasmobranchii: Myliobatiformes: Dasyatidae)

C Austin, M Tan, L Croft, M Meekan, H Gan, H Gan

(2016), Vol. 27, pp. 3205-3207, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

The complete mitogenome of the cow tail ray Pastinachus atrus (Macleay, 1883) (Elasmobranchii; Myliobatiformes; Dasyatidae)

C Austin, M Tan, Y Lee, L Croft, M Meekan, H Gan

(2016), Vol. 27, pp. 1372-1373, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

The complete mitogenome of the Murray Cod, Maccullochella peelii (Mitchell, 1838) (Teleostei: Percichthyidae)

C Austin, M Tan, Y Lee, L Croft, H Gan

(2016), Vol. 27, pp. 729-730, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

The complete mitogenome of the whale shark parasitic copepod Pandarus rhincodonicus norman, Newbound & Knott (Crustacea; Siphonostomatoida; Pandaridae) - a new gene order for the copepoda

C Austin, M Tan, Y Lee, L Croft, M Meekan, S Pierce, H Gan

(2016), Vol. 27, pp. 694-695, Mitochondrial DNA part a, Abingdon, Eng., C1-1

The complete mitogenome of the freshwater crayfish Cherax cainii (Crustacea: Decapoda: Parastacidae)

C Austin, M Tan, L Croft, H Gan

(2016), Vol. 27, pp. 126-127, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

The complete mitogenome of the crayfish Cherax glaber (Crustacea: Decapoda: Parastacidae)

C Austin, M Tan, L Croft, H Gan

(2016), Vol. 27, pp. 220-221, Mitochondrial DNA Part A, Abingdon, Eng., C1-1

Gender-specific molecular and clinical features underlie malignant pleural mesotheliom

A De Rienzo, M Archer, B Yeap, N Dao, D Sciaranghella, A Sideris, Y Zheng, A Holman, Y Wang, P Dal Cin, J Fletcher, R Rubio, L Croft, J Quackenbush, P Sugarbaker, K Munir, J Battilana, C Gustafson, L Chirieac, S Ching, J Wong, L Tay, S Rudd, R Hercus, D Sugarbaker, W Richards, R Beuno

(2016), Vol. 76, pp. 319-328, Cancer research, Philadelphia, Pa., C1-1

Whole genome sequencing of the Asian Arowana (Scleropages formosus) provides insights into the evolution of ray-finned fishes

C Austin, M Tan, L Croft, M Hammer, H Gan

(2015), Vol. 7, pp. 2885-2895, Genome biology and evolution, Oxford, Eng., C1-1

Efficient extraction of small and large RNAs in bacteria for excellent total RNA sequencing and comprehensive transcriptome analysis.

R Heera, P Sivachandran, S Chinni, J Mason, L Croft, M Ravichandran, L Yin

(2015), Vol. 8, pp. 1-11, BMC research notes, London, Eng., C1-1

Helicobacter pylori genetic diversity and gastro-duodenal diseases in Malaysia

S Gunaletchumy, I Seevasant, M Tan, L Croft, H Mitchell, K Goh, M Loke, J Vadivelu

(2014), Vol. 4, pp. 1-9, Scientific Reports, London, Eng., C1-1

Extragenic suppressor mutations that restore twitching motility to fimL mutants of Pseudomonas aeruginosa are associated with elevated intracellular cyclic AMP levels

L Nolan, S Beatson, L Croft, P Jones, A George, J Mattick, L Turnbull, C Whitchurch

(2012), Vol. 1, pp. 490-501, Microbiologyopen, Chichester, Eng., C1-1

Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs

C Voellenkle, J Rooij, A Guffanti, E Brini, P Fasanaro, E Isaia, L Croft, M David, M Capogrossi, A Moles, A Felsani, F Martelli

(2012), Vol. 18, pp. 472-484, RNA, New York, N.Y., C1-1

Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs

L Croft, D Szklarczyk, L Jensen, J Gorodkin

(2012), Vol. 6, pp. 1-10, BMC systems biology, London, Eng., C1-1

Intron splicing suppresses RNA silencing in Arabidopsis

M Christie, L Croft, B Carroll

(2011), Vol. 68, pp. 159-167, Plant journal, Chichester, Eng., C1-1

Evaluation of polymorphisms in predicted target sites for micro RNAs differentially expressed in endometriosis

Z Zhao, L Croft, D Nyholt, B Chapman, S Treloar, M Hull, G Montgomery

(2011), Vol. 17, pp. 92-103, Molecular human reproduction, Oxford, Eng., C1-1

MicroRNAs in the shoot apical meristem of soybean

C Wong, Y-T Zhao, X-J Wang, L Croft, Z-H Wang, F Haerizadeh, J Mattick, M Singh, B Carroll, P Bhalla

(2011), Vol. 62, pp. 2495-2506, Journal of experimental botany, Oxford, Eng., C1-1

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing

A Guffanti, M Iacono, P Pelucchi, N Kim, G Soldà, L Croft, R Taft, E Rizzi, M Askarian-Amiri, R Bonnal, M Callari, F Mignone, G Pesole, G Bertalot, L Bernardi, A Albertini, C Lee, J Mattick, I Zucchi, G De Bellis

(2009), Vol. 10, pp. 1-17, BMC genomics, London, Eng., C1-1

Aboriginality under the microscope: the biological descent test in Australian law

Loretta De Plevitz, Larry Croft

(2003), Vol. 3, QUT law review, Brisbane, Qld., C1-1

An interactive web-based Pseudomonas aeruginosa genome database: discovery of new genes, pathways and structures

L Croft, S Beatson, C Whitchurch, B Huang, R Blakeley, J Mattick

(2000), Vol. 146, pp. 2351-2364, Microbiology, London, Eng., C1-1

A minimal tiling path cosmid library for functional analysis of the Pseudomonas aeruginosa PAO1 genome

B Huang, C Whitchurch, L Croft, S Beatson, J Mattick

(2000), Vol. 5, pp. 189-203, Microbial & comparative genomics, New Rochelle, N.Y., C1-1